Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

JAKMIP2 (janus kinase and microtubule interacting protein 2)

Identity

Alias_symbol (synonym)JAMIP2
KIAA0555
Other aliasNECC1
HGNC (Hugo) JAKMIP2
LocusID (NCBI) 9832
Atlas_Id 51781
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 147585441 and ends at 147782848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARCN1 (11q23.3) / JAKMIP2 (5q32)DPYSL3 (5q32) / JAKMIP2 (5q32)JAKMIP2 (5q32) / DPYSL3 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JAKMIP2   29067
Cards
Entrez_Gene (NCBI)JAKMIP2  9832  janus kinase and microtubule interacting protein 2
AliasesJAMIP2; NECC1
GeneCards (Weizmann)JAKMIP2
Ensembl hg19 (Hinxton)ENSG00000176049 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176049 [Gene_View]  chr5:147585441-147782848 [Contig_View]  JAKMIP2 [Vega]
ICGC DataPortalENSG00000176049
TCGA cBioPortalJAKMIP2
AceView (NCBI)JAKMIP2
Genatlas (Paris)JAKMIP2
WikiGenes9832
SOURCE (Princeton)JAKMIP2
Genetics Home Reference (NIH)JAKMIP2
Genomic and cartography
GoldenPath hg38 (UCSC)JAKMIP2  -     chr5:147585441-147782848 -  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JAKMIP2  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblJAKMIP2 - 5q32 [CytoView hg19]  JAKMIP2 - 5q32 [CytoView hg38]
Mapping of homologs : NCBIJAKMIP2 [Mapview hg19]  JAKMIP2 [Mapview hg38]
OMIM611197   
Gene and transcription
Genbank (Entrez)AB011127 AF273057 AK291280 AK299724 BC003189
RefSeq transcript (Entrez)NM_001270934 NM_001270941 NM_001282282 NM_014790
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JAKMIP2
Cluster EST : UnigeneHs.744926 [ NCBI ]
CGAP (NCI)Hs.744926
Alternative Splicing GalleryENSG00000176049
Gene ExpressionJAKMIP2 [ NCBI-GEO ]   JAKMIP2 [ EBI - ARRAY_EXPRESS ]   JAKMIP2 [ SEEK ]   JAKMIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)JAKMIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9832
GTEX Portal (Tissue expression)JAKMIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AA8
Splice isoforms : SwissVarQ96AA8
PhosPhoSitePlusQ96AA8
Domains : Interpro (EBI)JAKMIP    JAKMIP_C   
Domain families : Pfam (Sanger)JAKMIP_CC3 (PF16034)   
Domain families : Pfam (NCBI)pfam16034   
Conserved Domain (NCBI)JAKMIP2
DMDM Disease mutations9832
Blocks (Seattle)JAKMIP2
SuperfamilyQ96AA8
Human Protein AtlasENSG00000176049
Peptide AtlasQ96AA8
HPRD11090
IPIIPI00059369   IPI00479428   IPI00867585   IPI00966910   
Protein Interaction databases
DIP (DOE-UCLA)Q96AA8
IntAct (EBI)Q96AA8
FunCoupENSG00000176049
BioGRIDJAKMIP2
STRING (EMBL)JAKMIP2
ZODIACJAKMIP2
Ontologies - Pathways
QuickGOQ96AA8
Ontology : AmiGOprotein binding  Golgi apparatus  microtubule binding  kinase binding  
Ontology : EGO-EBIprotein binding  Golgi apparatus  microtubule binding  kinase binding  
NDEx NetworkJAKMIP2
Atlas of Cancer Signalling NetworkJAKMIP2
Wikipedia pathwaysJAKMIP2
Orthology - Evolution
OrthoDB9832
GeneTree (enSembl)ENSG00000176049
Phylogenetic Trees/Animal Genes : TreeFamJAKMIP2
HOVERGENQ96AA8
HOGENOMQ96AA8
Homologs : HomoloGeneJAKMIP2
Homology/Alignments : Family Browser (UCSC)JAKMIP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJAKMIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JAKMIP2
dbVarJAKMIP2
ClinVarJAKMIP2
1000_GenomesJAKMIP2 
Exome Variant ServerJAKMIP2
ExAC (Exome Aggregation Consortium)JAKMIP2 (select the gene name)
Genetic variants : HAPMAP9832
Genomic Variants (DGV)JAKMIP2 [DGVbeta]
DECIPHERJAKMIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJAKMIP2 
Mutations
ICGC Data PortalJAKMIP2 
TCGA Data PortalJAKMIP2 
Broad Tumor PortalJAKMIP2
OASIS PortalJAKMIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJAKMIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJAKMIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JAKMIP2
DgiDB (Drug Gene Interaction Database)JAKMIP2
DoCM (Curated mutations)JAKMIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JAKMIP2 (select a term)
intoGenJAKMIP2
Cancer3DJAKMIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611197   
Orphanet
MedgenJAKMIP2
Genetic Testing Registry JAKMIP2
NextProtQ96AA8 [Medical]
TSGene9832
GENETestsJAKMIP2
Target ValidationJAKMIP2
Huge Navigator JAKMIP2 [HugePedia]
snp3D : Map Gene to Disease9832
BioCentury BCIQJAKMIP2
ClinGenJAKMIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9832
Chemical/Pharm GKB GenePA143485509
Clinical trialJAKMIP2
Miscellaneous
canSAR (ICR)JAKMIP2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJAKMIP2
EVEXJAKMIP2
GoPubMedJAKMIP2
iHOPJAKMIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:04:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.