Atlas of Genetics and Cytogenetics in Oncology and Haematology


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JAKMIP3 (Janus kinase and microtubule interacting protein 3)

Identity

Alias_namesC10orf39
C10orf14
chromosome 10 open reading frame 39
chromosome 10 open reading frame 14
Alias_symbol (synonym)FLJ37857
NECC2
KIAA4091
bA140A10.5
Other aliasJamip3
HGNC (Hugo) JAKMIP3
LocusID (NCBI) 282973
Atlas_Id 64714
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 132065967 and ends at 132184809 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
INPP5A (10q26.3) / JAKMIP3 (10q26.3)JAKMIP3 (10q26.3) / INPP5A (10q26.3)UPF3A (13q34) / JAKMIP3 (10q26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JAKMIP3   23523
Cards
Entrez_Gene (NCBI)JAKMIP3  282973  Janus kinase and microtubule interacting protein 3
AliasesC10orf14; C10orf39; Jamip3; NECC2; 
bA140A10.5
GeneCards (Weizmann)JAKMIP3
Ensembl hg19 (Hinxton)ENSG00000188385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188385 [Gene_View]  chr10:132065967-132184809 [Contig_View]  JAKMIP3 [Vega]
ICGC DataPortalENSG00000188385
TCGA cBioPortalJAKMIP3
AceView (NCBI)JAKMIP3
Genatlas (Paris)JAKMIP3
WikiGenes282973
SOURCE (Princeton)JAKMIP3
Genetics Home Reference (NIH)JAKMIP3
Genomic and cartography
GoldenPath hg38 (UCSC)JAKMIP3  -     chr10:132065967-132184809 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JAKMIP3  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblJAKMIP3 - 10q26.3 [CytoView hg19]  JAKMIP3 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIJAKMIP3 [Mapview hg19]  JAKMIP3 [Mapview hg38]
OMIM611198   
Gene and transcription
Genbank (Entrez)AK095176 AK097818 AK123426 AK126964 AL137551
RefSeq transcript (Entrez)NM_001104947 NM_001105521 NM_001323086 NM_001323087 NM_001323088 NM_001323089 NM_001323090 NM_194303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JAKMIP3
Cluster EST : UnigeneHs.106254 [ NCBI ]
CGAP (NCI)Hs.106254
Alternative Splicing GalleryENSG00000188385
Gene ExpressionJAKMIP3 [ NCBI-GEO ]   JAKMIP3 [ EBI - ARRAY_EXPRESS ]   JAKMIP3 [ SEEK ]   JAKMIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)JAKMIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282973
GTEX Portal (Tissue expression)JAKMIP3
Human Protein AtlasENSG00000188385-JAKMIP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZ66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZ66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZ66
Splice isoforms : SwissVarQ5VZ66
PhosPhoSitePlusQ5VZ66
Domains : Interpro (EBI)JAKMIP    JAKMIP_C   
Domain families : Pfam (Sanger)JAKMIP_CC3 (PF16034)   
Domain families : Pfam (NCBI)pfam16034   
Conserved Domain (NCBI)JAKMIP3
DMDM Disease mutations282973
Blocks (Seattle)JAKMIP3
SuperfamilyQ5VZ66
Human Protein Atlas [tissue]ENSG00000188385-JAKMIP3 [tissue]
Peptide AtlasQ5VZ66
HPRD12574
IPIIPI00641749   IPI00375609   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZ66
IntAct (EBI)Q5VZ66
FunCoupENSG00000188385
BioGRIDJAKMIP3
STRING (EMBL)JAKMIP3
ZODIACJAKMIP3
Ontologies - Pathways
QuickGOQ5VZ66
Ontology : AmiGOGolgi apparatus  microtubule binding  kinase binding  
Ontology : EGO-EBIGolgi apparatus  microtubule binding  kinase binding  
NDEx NetworkJAKMIP3
Atlas of Cancer Signalling NetworkJAKMIP3
Wikipedia pathwaysJAKMIP3
Orthology - Evolution
OrthoDB282973
GeneTree (enSembl)ENSG00000188385
Phylogenetic Trees/Animal Genes : TreeFamJAKMIP3
HOVERGENQ5VZ66
HOGENOMQ5VZ66
Homologs : HomoloGeneJAKMIP3
Homology/Alignments : Family Browser (UCSC)JAKMIP3
Gene fusions - Rearrangements
Tumor Fusion PortalJAKMIP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJAKMIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JAKMIP3
dbVarJAKMIP3
ClinVarJAKMIP3
1000_GenomesJAKMIP3 
Exome Variant ServerJAKMIP3
ExAC (Exome Aggregation Consortium)ENSG00000188385
GNOMAD BrowserENSG00000188385
Genetic variants : HAPMAP282973
Genomic Variants (DGV)JAKMIP3 [DGVbeta]
DECIPHERJAKMIP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJAKMIP3 
Mutations
ICGC Data PortalJAKMIP3 
TCGA Data PortalJAKMIP3 
Broad Tumor PortalJAKMIP3
OASIS PortalJAKMIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJAKMIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJAKMIP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JAKMIP3
DgiDB (Drug Gene Interaction Database)JAKMIP3
DoCM (Curated mutations)JAKMIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JAKMIP3 (select a term)
intoGenJAKMIP3
Cancer3DJAKMIP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611198   
Orphanet
DisGeNETJAKMIP3
MedgenJAKMIP3
Genetic Testing Registry JAKMIP3
NextProtQ5VZ66 [Medical]
TSGene282973
GENETestsJAKMIP3
Target ValidationJAKMIP3
Huge Navigator JAKMIP3 [HugePedia]
snp3D : Map Gene to Disease282973
BioCentury BCIQJAKMIP3
ClinGenJAKMIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD282973
Chemical/Pharm GKB GenePA162392367
Clinical trialJAKMIP3
Miscellaneous
canSAR (ICR)JAKMIP3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJAKMIP3
EVEXJAKMIP3
GoPubMedJAKMIP3
iHOPJAKMIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:21:45 CET 2017

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