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JAML (junction adhesion molecule like)

Identity

Alias_namesAMICA1
adhesion molecule
Alias_symbol (synonym)Gm638
AMICA
Other aliasCREA7-1
CREA7-4
HGNC (Hugo) JAML
LocusID (NCBI) 120425
Atlas_Id 56484
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118193727 and ends at 118225094 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JAML (11q23.3) / EHBP1 (2p15)PTPN1 (20q13.13) / JAML (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JAML   19084
Cards
Entrez_Gene (NCBI)JAML  120425  junction adhesion molecule like
AliasesAMICA; AMICA1; CREA7-1; CREA7-4; 
Gm638
GeneCards (Weizmann)JAML
Ensembl hg19 (Hinxton)ENSG00000160593 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160593 [Gene_View]  chr11:118193727-118225094 [Contig_View]  JAML [Vega]
ICGC DataPortalENSG00000160593
TCGA cBioPortalJAML
AceView (NCBI)JAML
Genatlas (Paris)JAML
WikiGenes120425
SOURCE (Princeton)JAML
Genetics Home Reference (NIH)JAML
Genomic and cartography
GoldenPath hg38 (UCSC)JAML  -     chr11:118193727-118225094 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JAML  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblJAML - 11q23.3 [CytoView hg19]  JAML - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIJAML [Mapview hg19]  JAML [Mapview hg38]
OMIM609770   
Gene and transcription
Genbank (Entrez)AJ515553 AK057590 AK090409 AK094399 AK097285
RefSeq transcript (Entrez)NM_001098526 NM_001286570 NM_001286571 NM_153206
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JAML
Cluster EST : UnigeneHs.16291 [ NCBI ]
CGAP (NCI)Hs.16291
Alternative Splicing GalleryENSG00000160593
Gene ExpressionJAML [ NCBI-GEO ]   JAML [ EBI - ARRAY_EXPRESS ]   JAML [ SEEK ]   JAML [ MEM ]
Gene Expression Viewer (FireBrowse)JAML [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120425
GTEX Portal (Tissue expression)JAML
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YT9
Splice isoforms : SwissVarQ86YT9
PhosPhoSitePlusQ86YT9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    JAML    Myelin_P0-rel   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)JAML
DMDM Disease mutations120425
Blocks (Seattle)JAML
SuperfamilyQ86YT9
Human Protein AtlasENSG00000160593
Peptide AtlasQ86YT9
HPRD16482
IPIIPI00385063   IPI00183703   IPI00607549   IPI00909734   IPI00981207   IPI00984583   IPI01019082   IPI00981282   IPI00980646   
Protein Interaction databases
DIP (DOE-UCLA)Q86YT9
IntAct (EBI)Q86YT9
FunCoupENSG00000160593
BioGRIDJAML
STRING (EMBL)JAML
ZODIACJAML
Ontologies - Pathways
QuickGOQ86YT9
Ontology : AmiGOintegrin binding  plasma membrane  plasma membrane  bicellular tight junction  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  integral component of membrane  neutrophil chemotaxis  monocyte extravasation  protein homodimerization activity  gamma-delta T cell activation  regulation of immune response  cell adhesion molecule binding  leukocyte migration  positive regulation of epithelial cell proliferation involved in wound healing  neutrophil extravasation  
Ontology : EGO-EBIintegrin binding  plasma membrane  plasma membrane  bicellular tight junction  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  integral component of membrane  neutrophil chemotaxis  monocyte extravasation  protein homodimerization activity  gamma-delta T cell activation  regulation of immune response  cell adhesion molecule binding  leukocyte migration  positive regulation of epithelial cell proliferation involved in wound healing  neutrophil extravasation  
NDEx NetworkJAML
Atlas of Cancer Signalling NetworkJAML
Wikipedia pathwaysJAML
Orthology - Evolution
OrthoDB120425
GeneTree (enSembl)ENSG00000160593
Phylogenetic Trees/Animal Genes : TreeFamJAML
HOVERGENQ86YT9
HOGENOMQ86YT9
Homologs : HomoloGeneJAML
Homology/Alignments : Family Browser (UCSC)JAML
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJAML [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JAML
dbVarJAML
ClinVarJAML
1000_GenomesJAML 
Exome Variant ServerJAML
ExAC (Exome Aggregation Consortium)JAML (select the gene name)
Genetic variants : HAPMAP120425
Genomic Variants (DGV)JAML [DGVbeta]
DECIPHERJAML [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJAML 
Mutations
ICGC Data PortalJAML 
TCGA Data PortalJAML 
Broad Tumor PortalJAML
OASIS PortalJAML [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDJAML
BioMutasearch JAML
DgiDB (Drug Gene Interaction Database)JAML
DoCM (Curated mutations)JAML (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JAML (select a term)
intoGenJAML
Cancer3DJAML(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609770   
Orphanet
MedgenJAML
Genetic Testing Registry JAML
NextProtQ86YT9 [Medical]
TSGene120425
GENETestsJAML
Target ValidationJAML
Huge Navigator JAML [HugePedia]
snp3D : Map Gene to Disease120425
BioCentury BCIQJAML
ClinGenJAML
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120425
Chemical/Pharm GKB GenePA38792
Clinical trialJAML
Miscellaneous
canSAR (ICR)JAML (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJAML
EVEXJAML
GoPubMedJAML
iHOPJAML
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:13:54 CEST 2017

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