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JCAD (junctional cadherin 5 associated)

Identity

Alias (NCBI)KIAA1462
HGNC (Hugo) JCAD
HGNC Alias namejunctional protein associated with coronary artery disease
HGNC Previous nameKIAA1462
HGNC Previous nameKIAA1462
LocusID (NCBI) 57608
Atlas_Id 57115
Location 10p11.23  [Link to chromosome band 10p11]
Location_base_pair Starts at 30012804 and ends at 30059586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)JCAD   29283
Cards
Entrez_Gene (NCBI)JCAD    junctional cadherin 5 associated
AliasesKIAA1462
GeneCards (Weizmann)JCAD
Ensembl hg19 (Hinxton)ENSG00000165757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165757 [Gene_View]  ENSG00000165757 [Sequence]  chr10:30012804-30059586 [Contig_View]  JCAD [Vega]
ICGC DataPortalENSG00000165757
TCGA cBioPortalJCAD
AceView (NCBI)JCAD
Genatlas (Paris)JCAD
SOURCE (Princeton)JCAD
Genetics Home Reference (NIH)JCAD
Genomic and cartography
GoldenPath hg38 (UCSC)JCAD  -     chr10:30012804-30059586 -  10p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JCAD  -     10p11.23   [Description]    (hg19-Feb_2009)
GoldenPathJCAD - 10p11.23 [CytoView hg19]  JCAD - 10p11.23 [CytoView hg38]
ImmunoBaseENSG00000165757
Genome Data Viewer NCBIJCAD [Mapview hg19]  
OMIM614398   
Gene and transcription
Genbank (Entrez)AB040895 AK055602 AK074200 AK308850 AL050154
RefSeq transcript (Entrez)NM_001350001 NM_001350021 NM_001350022 NM_020848
Consensus coding sequences : CCDS (NCBI)JCAD
Gene ExpressionJCAD [ NCBI-GEO ]   JCAD [ EBI - ARRAY_EXPRESS ]   JCAD [ SEEK ]   JCAD [ MEM ]
Gene Expression Viewer (FireBrowse)JCAD [ Firebrowse - Broad ]
GenevisibleExpression of JCAD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57608
GTEX Portal (Tissue expression)JCAD
Human Protein AtlasENSG00000165757-JCAD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P266   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P266  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P266
PhosPhoSitePlusQ9P266
Domains : Interpro (EBI)JCAD   
Domain families : Pfam (Sanger)JCAD (PF15351)   
Domain families : Pfam (NCBI)pfam15351   
Conserved Domain (NCBI)JCAD
SuperfamilyQ9P266
AlphaFold pdb e-kbQ9P266   
Human Protein Atlas [tissue]ENSG00000165757-JCAD [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9P266
IntAct (EBI)Q9P266
BioGRIDJCAD
STRING (EMBL)JCAD
ZODIACJCAD
Ontologies - Pathways
QuickGOQ9P266
Ontology : AmiGOadherens junction  adherens junction  cell adhesion  ruffle membrane  ruffle membrane  positive regulation of MAPK cascade  perinuclear region of cytoplasm  positive regulation of cell migration involved in sprouting angiogenesis  positive regulation of vascular endothelial growth factor signaling pathway  positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  positive regulation of sprouting angiogenesis  
Ontology : EGO-EBIadherens junction  adherens junction  cell adhesion  ruffle membrane  ruffle membrane  positive regulation of MAPK cascade  perinuclear region of cytoplasm  positive regulation of cell migration involved in sprouting angiogenesis  positive regulation of vascular endothelial growth factor signaling pathway  positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  positive regulation of sprouting angiogenesis  
NDEx NetworkJCAD
Atlas of Cancer Signalling NetworkJCAD
Wikipedia pathwaysJCAD
Orthology - Evolution
OrthoDB57608
GeneTree (enSembl)ENSG00000165757
Phylogenetic Trees/Animal Genes : TreeFamJCAD
Homologs : HomoloGeneJCAD
Homology/Alignments : Family Browser (UCSC)JCAD
Gene fusions - Rearrangements
Fusion : QuiverJCAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJCAD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JCAD
dbVarJCAD
ClinVarJCAD
MonarchJCAD
1000_GenomesJCAD 
Exome Variant ServerJCAD
GNOMAD BrowserENSG00000165757
Varsome BrowserJCAD
ACMGJCAD variants
VarityQ9P266
Genomic Variants (DGV)JCAD [DGVbeta]
DECIPHERJCAD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJCAD 
Mutations
ICGC Data PortalJCAD 
TCGA Data PortalJCAD 
Broad Tumor PortalJCAD
OASIS PortalJCAD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJCAD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DJCAD
Mutations and Diseases : HGMDJCAD
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaJCAD
DgiDB (Drug Gene Interaction Database)JCAD
DoCM (Curated mutations)JCAD
CIViC (Clinical Interpretations of Variants in Cancer)JCAD
Cancer3DJCAD
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614398   
Orphanet
DisGeNETJCAD
MedgenJCAD
Genetic Testing Registry JCAD
NextProtQ9P266 [Medical]
GENETestsJCAD
Target ValidationJCAD
Huge Navigator JCAD [HugePedia]
ClinGenJCAD
Clinical trials, drugs, therapy
MyCancerGenomeJCAD
Protein Interactions : CTDJCAD
Pharm GKB GenePA134955526
PharosQ9P266
Clinical trialJCAD
Miscellaneous
canSAR (ICR)JCAD
HarmonizomeJCAD
DataMed IndexJCAD
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXJCAD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:14:29 CEST 2021

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