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JCAD (junctional cadherin 5 associated)

Identity

Other aliasKIAA1462
HGNC (Hugo) JCAD
LocusID (NCBI) 57608
Atlas_Id 57115
Location 10p11.23  [Link to chromosome band 10p11]
Location_base_pair Starts at 30014455 and ends at 30047842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)JCAD   29283
Cards
Entrez_Gene (NCBI)JCAD  57608  junctional cadherin 5 associated
AliasesKIAA1462
GeneCards (Weizmann)JCAD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:30014455-30047842 [Contig_View]  JCAD [Vega]
TCGA cBioPortalJCAD
AceView (NCBI)JCAD
Genatlas (Paris)JCAD
WikiGenes57608
SOURCE (Princeton)JCAD
Genetics Home Reference (NIH)JCAD
Genomic and cartography
GoldenPath hg38 (UCSC)JCAD  -     chr10:30014455-30047842 -  10p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JCAD  -     10p11.23   [Description]    (hg19-Feb_2009)
EnsemblJCAD - 10p11.23 [CytoView hg19]  JCAD - 10p11.23 [CytoView hg38]
Mapping of homologs : NCBIJCAD [Mapview hg19]  JCAD [Mapview hg38]
OMIM614398   
Gene and transcription
Genbank (Entrez)AB040895 AK055602 AK074200 AK308850 AL050154
RefSeq transcript (Entrez)NM_001350001 NM_001350021 NM_001350022 NM_020848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JCAD
Cluster EST : UnigeneHs.533953 [ NCBI ]
CGAP (NCI)Hs.533953
Gene ExpressionJCAD [ NCBI-GEO ]   JCAD [ EBI - ARRAY_EXPRESS ]   JCAD [ SEEK ]   JCAD [ MEM ]
Gene Expression Viewer (FireBrowse)JCAD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57608
GTEX Portal (Tissue expression)JCAD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P266   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P266  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P266
Splice isoforms : SwissVarQ9P266
PhosPhoSitePlusQ9P266
Domains : Interpro (EBI)JCAD   
Domain families : Pfam (Sanger)JCAD (PF15351)   
Domain families : Pfam (NCBI)pfam15351   
Conserved Domain (NCBI)JCAD
DMDM Disease mutations57608
Blocks (Seattle)JCAD
SuperfamilyQ9P266
Peptide AtlasQ9P266
IPIIPI00292817   
Protein Interaction databases
DIP (DOE-UCLA)Q9P266
IntAct (EBI)Q9P266
BioGRIDJCAD
STRING (EMBL)JCAD
ZODIACJCAD
Ontologies - Pathways
QuickGOQ9P266
Ontology : AmiGOcell-cell junction  adherens junction  cell adhesion  ruffle membrane  positive regulation of MAPK cascade  perinuclear region of cytoplasm  positive regulation of cell migration involved in sprouting angiogenesis  positive regulation of vascular endothelial growth factor signaling pathway  positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  
Ontology : EGO-EBIcell-cell junction  adherens junction  cell adhesion  ruffle membrane  positive regulation of MAPK cascade  perinuclear region of cytoplasm  positive regulation of cell migration involved in sprouting angiogenesis  positive regulation of vascular endothelial growth factor signaling pathway  positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis  
NDEx NetworkJCAD
Atlas of Cancer Signalling NetworkJCAD
Wikipedia pathwaysJCAD
Orthology - Evolution
OrthoDB57608
Phylogenetic Trees/Animal Genes : TreeFamJCAD
HOVERGENQ9P266
HOGENOMQ9P266
Homologs : HomoloGeneJCAD
Homology/Alignments : Family Browser (UCSC)JCAD
Gene fusions - Rearrangements
Tumor Fusion PortalJCAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJCAD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JCAD
dbVarJCAD
ClinVarJCAD
1000_GenomesJCAD 
Exome Variant ServerJCAD
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP57608
Genomic Variants (DGV)JCAD [DGVbeta]
DECIPHERJCAD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJCAD 
Mutations
ICGC Data PortalJCAD 
TCGA Data PortalJCAD 
Broad Tumor PortalJCAD
OASIS PortalJCAD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDJCAD
BioMutasearch JCAD
DgiDB (Drug Gene Interaction Database)JCAD
DoCM (Curated mutations)JCAD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JCAD (select a term)
intoGenJCAD
Cancer3DJCAD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614398   
Orphanet
DisGeNETJCAD
MedgenJCAD
Genetic Testing Registry JCAD
NextProtQ9P266 [Medical]
TSGene57608
GENETestsJCAD
Target ValidationJCAD
Huge Navigator JCAD [HugePedia]
snp3D : Map Gene to Disease57608
BioCentury BCIQJCAD
ClinGenJCAD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57608
Chemical/Pharm GKB GenePA134955526
Clinical trialJCAD
Miscellaneous
canSAR (ICR)JCAD (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJCAD
EVEXJCAD
GoPubMedJCAD
iHOPJCAD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:18:23 CET 2017

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