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JHY (junctional cadherin complex regulator)

Identity

Other aliasC11orf63
HGNC (Hugo) JHY
LocusID (NCBI) 79864
Atlas_Id 80306
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 122882528 and ends at 122905887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)JHY   26288
Cards
Entrez_Gene (NCBI)JHY  79864  junctional cadherin complex regulator
AliasesC11orf63
GeneCards (Weizmann)JHY
Ensembl hg19 (Hinxton)ENSG00000109944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109944 [Gene_View]  ENSG00000109944 [Sequence]  chr11:122882528-122905887 [Contig_View]  JHY [Vega]
ICGC DataPortalENSG00000109944
TCGA cBioPortalJHY
AceView (NCBI)JHY
Genatlas (Paris)JHY
WikiGenes79864
SOURCE (Princeton)JHY
Genetics Home Reference (NIH)JHY
Genomic and cartography
GoldenPath hg38 (UCSC)JHY  -     chr11:122882528-122905887 +  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JHY  -     11q24.1   [Description]    (hg19-Feb_2009)
GoldenPathJHY - 11q24.1 [CytoView hg19]  JHY - 11q24.1 [CytoView hg38]
ImmunoBaseENSG00000109944
Mapping of homologs : NCBIJHY [Mapview hg19]  JHY [Mapview hg38]
OMIM617594   
Gene and transcription
Genbank (Entrez)AK027207 AK097534 AK291625 BC009820 BC068507
RefSeq transcript (Entrez)NM_001363087 NM_001363088 NM_001363089 NM_024806 NM_199124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JHY
Alternative Splicing GalleryENSG00000109944
Gene ExpressionJHY [ NCBI-GEO ]   JHY [ EBI - ARRAY_EXPRESS ]   JHY [ SEEK ]   JHY [ MEM ]
Gene Expression Viewer (FireBrowse)JHY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79864
GTEX Portal (Tissue expression)JHY
Human Protein AtlasENSG00000109944-JHY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUN7
Splice isoforms : SwissVarQ6NUN7
PhosPhoSitePlusQ6NUN7
Domains : Interpro (EBI)JHY   
Domain families : Pfam (Sanger)JHY (PF15261)   
Domain families : Pfam (NCBI)pfam15261   
Conserved Domain (NCBI)JHY
DMDM Disease mutations79864
Blocks (Seattle)JHY
SuperfamilyQ6NUN7
Human Protein Atlas [tissue]ENSG00000109944-JHY [tissue]
Peptide AtlasQ6NUN7
IPIIPI00015695   IPI00395798   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUN7
IntAct (EBI)Q6NUN7
FunCoupENSG00000109944
BioGRIDJHY
STRING (EMBL)JHY
ZODIACJHY
Ontologies - Pathways
QuickGOQ6NUN7
Ontology : AmiGObrain development  ciliary basal body organization  cerebrospinal fluid secretion  axoneme assembly  
Ontology : EGO-EBIbrain development  ciliary basal body organization  cerebrospinal fluid secretion  axoneme assembly  
NDEx NetworkJHY
Atlas of Cancer Signalling NetworkJHY
Wikipedia pathwaysJHY
Orthology - Evolution
OrthoDB79864
GeneTree (enSembl)ENSG00000109944
Phylogenetic Trees/Animal Genes : TreeFamJHY
HOGENOMQ6NUN7
Homologs : HomoloGeneJHY
Homology/Alignments : Family Browser (UCSC)JHY
Gene fusions - Rearrangements
Fusion : QuiverJHY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJHY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JHY
dbVarJHY
ClinVarJHY
1000_GenomesJHY 
Exome Variant ServerJHY
ExAC (Exome Aggregation Consortium)ENSG00000109944
GNOMAD BrowserENSG00000109944
Varsome BrowserJHY
Genetic variants : HAPMAP79864
Genomic Variants (DGV)JHY [DGVbeta]
DECIPHERJHY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJHY 
Mutations
ICGC Data PortalJHY 
TCGA Data PortalJHY 
Broad Tumor PortalJHY
OASIS PortalJHY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJHY  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DJHY
Mutations and Diseases : HGMDJHY
BioMutasearch JHY
DgiDB (Drug Gene Interaction Database)JHY
DoCM (Curated mutations)JHY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JHY (select a term)
intoGenJHY
Cancer3DJHY(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617594   
Orphanet
DisGeNETJHY
MedgenJHY
Genetic Testing Registry JHY
NextProtQ6NUN7 [Medical]
TSGene79864
GENETestsJHY
Target ValidationJHY
Huge Navigator JHY [HugePedia]
snp3D : Map Gene to Disease79864
BioCentury BCIQJHY
ClinGenJHY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79864
Chemical/Pharm GKB GenePA143485358
Clinical trialJHY
Miscellaneous
canSAR (ICR)JHY (select the gene name)
HarmonizomeJHY
DataMed IndexJHY
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJHY
EVEXJHY
GoPubMedJHY
iHOPJHY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Mar 11 19:57:50 CET 2020

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