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JKAMP (JNK1/MAPK8-associated membrane protein)

Identity

Alias_namesC14orf100
chromosome 14 open reading frame 100
Alias_symbol (synonym)HSPC213
JAMP
HSPC327
CDA06
Other aliasC24orf100
HGNC (Hugo) JKAMP
LocusID (NCBI) 51528
Atlas_Id 64718
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 59484443 and ends at 59505406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JKAMP (14q23.1) / DNM3 (1q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JKAMP   20184
Cards
Entrez_Gene (NCBI)JKAMP  51528  JNK1/MAPK8-associated membrane protein
AliasesC14orf100; C24orf100; CDA06; HSPC213; 
HSPC327; JAMP
GeneCards (Weizmann)JKAMP
Ensembl hg19 (Hinxton)ENSG00000050130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000050130 [Gene_View]  chr14:59484443-59505406 [Contig_View]  JKAMP [Vega]
ICGC DataPortalENSG00000050130
TCGA cBioPortalJKAMP
AceView (NCBI)JKAMP
Genatlas (Paris)JKAMP
WikiGenes51528
SOURCE (Princeton)JKAMP
Genetics Home Reference (NIH)JKAMP
Genomic and cartography
GoldenPath hg38 (UCSC)JKAMP  -     chr14:59484443-59505406 +  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JKAMP  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblJKAMP - 14q23.1 [CytoView hg19]  JKAMP - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBIJKAMP [Mapview hg19]  JKAMP [Mapview hg38]
OMIM611176   
Gene and transcription
Genbank (Entrez)AA461198 AF151047 AF161445 AF212245 AF529304
RefSeq transcript (Entrez)NM_001098625 NM_001284201 NM_001284202 NM_001284203 NM_001284204 NM_016475
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JKAMP
Cluster EST : UnigeneHs.446850 [ NCBI ]
CGAP (NCI)Hs.446850
Alternative Splicing GalleryENSG00000050130
Gene ExpressionJKAMP [ NCBI-GEO ]   JKAMP [ EBI - ARRAY_EXPRESS ]   JKAMP [ SEEK ]   JKAMP [ MEM ]
Gene Expression Viewer (FireBrowse)JKAMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51528
GTEX Portal (Tissue expression)JKAMP
Human Protein AtlasENSG00000050130-JKAMP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P055   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P055  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P055
Splice isoforms : SwissVarQ9P055
PhosPhoSitePlusQ9P055
Domains : Interpro (EBI)DUF766   
Domain families : Pfam (Sanger)DUF766 (PF05571)   
Domain families : Pfam (NCBI)pfam05571   
Conserved Domain (NCBI)JKAMP
DMDM Disease mutations51528
Blocks (Seattle)JKAMP
SuperfamilyQ9P055
Human Protein Atlas [tissue]ENSG00000050130-JKAMP [tissue]
Peptide AtlasQ9P055
HPRD12623
IPIIPI00384318   IPI00384319   IPI00396003   IPI00942865   IPI00847220   IPI01026247   IPI01026354   IPI01026487   IPI01024730   
Protein Interaction databases
DIP (DOE-UCLA)Q9P055
IntAct (EBI)Q9P055
FunCoupENSG00000050130
BioGRIDJKAMP
STRING (EMBL)JKAMP
ZODIACJKAMP
Ontologies - Pathways
QuickGOQ9P055
Ontology : AmiGOendoplasmic reticulum membrane  response to unfolded protein  integral component of membrane  ubiquitin-dependent ERAD pathway  ubiquitin protein ligase binding  
Ontology : EGO-EBIendoplasmic reticulum membrane  response to unfolded protein  integral component of membrane  ubiquitin-dependent ERAD pathway  ubiquitin protein ligase binding  
NDEx NetworkJKAMP
Atlas of Cancer Signalling NetworkJKAMP
Wikipedia pathwaysJKAMP
Orthology - Evolution
OrthoDB51528
GeneTree (enSembl)ENSG00000050130
Phylogenetic Trees/Animal Genes : TreeFamJKAMP
HOVERGENQ9P055
HOGENOMQ9P055
Homologs : HomoloGeneJKAMP
Homology/Alignments : Family Browser (UCSC)JKAMP
Gene fusions - Rearrangements
Tumor Fusion PortalJKAMP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJKAMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JKAMP
dbVarJKAMP
ClinVarJKAMP
1000_GenomesJKAMP 
Exome Variant ServerJKAMP
ExAC (Exome Aggregation Consortium)ENSG00000050130
GNOMAD BrowserENSG00000050130
Genetic variants : HAPMAP51528
Genomic Variants (DGV)JKAMP [DGVbeta]
DECIPHERJKAMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJKAMP 
Mutations
ICGC Data PortalJKAMP 
TCGA Data PortalJKAMP 
Broad Tumor PortalJKAMP
OASIS PortalJKAMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJKAMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJKAMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JKAMP
DgiDB (Drug Gene Interaction Database)JKAMP
DoCM (Curated mutations)JKAMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JKAMP (select a term)
intoGenJKAMP
Cancer3DJKAMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611176   
Orphanet
DisGeNETJKAMP
MedgenJKAMP
Genetic Testing Registry JKAMP
NextProtQ9P055 [Medical]
TSGene51528
GENETestsJKAMP
Target ValidationJKAMP
Huge Navigator JKAMP [HugePedia]
snp3D : Map Gene to Disease51528
BioCentury BCIQJKAMP
ClinGenJKAMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51528
Chemical/Pharm GKB GenePA165479069
Clinical trialJKAMP
Miscellaneous
canSAR (ICR)JKAMP (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJKAMP
EVEXJKAMP
GoPubMedJKAMP
iHOPJKAMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:38 CET 2017

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