JMJD2B (jumonji domain containing 2B)

Identity

Other names	FLJ44906
	KDM4B
	KIAA0876
HGNC	JMJD2B
Location	19p13.3
Location_base_pair	Starts at 4920124 and ends at 5104608 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	JMJD2B   29136
Entrez_Gene	JMJD2B  23030  jumonji domain containing 2B
	Cards
GeneCards	JMJD2B
Ensembl	JMJD2B [Search_View]   ENSG00000127663 [Gene_View]
Genatlas	JMJD2B
GeneLynx	JMJD2B
eGenome	JMJD2B
euGene	23030
	Genomic and cartography
GoldenPath	JMJD2B  -  19p13.3   chr19:4920124-5104608 +  19p13.3   [Description]    (hg18-March_2006)
Ensembl	JMJD2B - 19p13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	JMJD2B
	Gene and transcription
Genbank	AB020683 [ ENTREZ ]
Genbank	AF052144 [ ENTREZ ]
Genbank	AK026040 [ ENTREZ ]
Genbank	AK126854 [ ENTREZ ]
Genbank	AL133622 [ ENTREZ ]
RefSeq	NM_015015 [ SRS ]    NM_015015 [ ENTREZ ]
RefSeq	AC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeq	AC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeq	NC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeq	NT_011255 [ SRS ]    NT_011255 [ ENTREZ ]
RefSeq	NW_001838477 [ SRS ]    NW_001838477 [ ENTREZ ]
RefSeq	NW_927173 [ SRS ]    NW_927173 [ ENTREZ ]
AceView	JMJD2B AceView - NCBI
Unigene	Hs.654816 [ SRS ]    Hs.654816 [ NCBI ]     HS654816 [ spliceNest ]
Fast-db	2913 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O94953 [ SRS]    O94953 [ EXPASY ]     O94953 [ INTERPRO ]     O94953 [ UNIPROT ]
Prosite	PS51184 JMJC [ SRS ]    PS51184 JMJC [ Expasy ]
Prosite	PS51183 JMJN [ SRS ]    PS51183 JMJN [ Expasy ]
Prosite	PS50304 TUDOR [ SRS ]    PS50304 TUDOR [ Expasy ]
Prosite	PS01359 ZF_PHD_1 [ SRS ]    PS01359 ZF_PHD_1 [ Expasy ]
Prosite	PS50016 ZF_PHD_2 [ SRS ]    PS50016 ZF_PHD_2 [ Expasy ]
Interpro	IPR013129 TF_JmjC [ SRS ]    IPR013129 TF_JmjC [ EBI ]
Interpro	IPR003347 TF_JmjC_AAH [ SRS ]    IPR003347 TF_JmjC_AAH [ EBI ]
Interpro	IPR003349 TF_JmjN [ SRS ]    IPR003349 TF_JmjN [ EBI ]
Interpro	IPR002999 Tudor [ SRS ]    IPR002999 Tudor [ EBI ]
Interpro	IPR001965 Znf_PHD [ SRS ]    IPR001965 Znf_PHD [ EBI ]
CluSTr	O94953
Pfam	PF02373 JmjC [ SRS ]    PF02373 JmjC [ Sanger ]    pfam02373 [ NCBI-CDD ]
Pfam	PF02375 JmjN [ SRS ]    PF02375 JmjN [ Sanger ]    pfam02375 [ NCBI-CDD ]
Pfam	PF00628 PHD [ SRS ]    PF00628 PHD [ Sanger ]    pfam00628 [ NCBI-CDD ]
Smart	SM00558 JmjC [EMBL]
Smart	SM00545 JmjN [EMBL]
Smart	SM00249 PHD [EMBL]
Smart	SM00333 TUDOR [EMBL]
Blocks	O94953
HPRD	11056
	Protein Interaction databases
DIP	O94953
IntAct	O94953
	Polymorphism : SNP, mutations, diseases
OMIM	609765    [ map ]
GENECLINICS	609765
SNP	JMJD2B [dbSNP-NCBI]
SNP	NM_015015 [SNP-NCI]
SNP	JMJD2B [GeneSNPs - Utah]  JMJD2B] [HGBASE - SRS]
HAPMAP	JMJD2B [HAPMAP]
COSMIC	JMJD2B [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	JMJD2B
	General knowledge
Family Browser	JMJD2B [UCSC Family Browser]
SOURCE	NM_015015
SMD	Hs.654816
SAGE	Hs.654816
Enzyme	1.14.11.- [ Enzyme-Expasy ]   1.14.11.- [ Enzyme-SRS ]   1.14.11.- [ IntEnz-EBI ]   1.14.11.- [ BRENDA ]   1.14.11.- [ KEGG ]   1.14.11.- [ WIT ]
GO	nucleic acid binding [Amigo]  nucleic acid binding
GO	iron ion binding [Amigo]  iron ion binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	zinc ion binding [Amigo]  zinc ion binding
GO	oxidoreductase activity [Amigo]  oxidoreductase activity
GO	chromatin modification [Amigo]  chromatin modification
GO	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Amigo]  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO	metal ion binding [Amigo]  metal ion binding
GO	oxidation reduction [Amigo]  oxidation reduction
PubGene	JMJD2B
TreeFam	JMJD2B
CTD	23030 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	JMJD2B Related clones (RZPD - Berlin)
	PubMed
PubMed	14 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:18:31 2008