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JMJD4 (jumonji domain containing 4)

Identity

Alias_symbol (synonym)FLJ12517
Other alias-
HGNC (Hugo) JMJD4
LocusID (NCBI) 65094
Atlas_Id 47169
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 227731189 and ends at 227735411 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JMJD4   25724
Cards
Entrez_Gene (NCBI)JMJD4  65094  jumonji domain containing 4
Aliases
GeneCards (Weizmann)JMJD4
Ensembl hg19 (Hinxton)ENSG00000081692 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081692 [Gene_View]  chr1:227731189-227735411 [Contig_View]  JMJD4 [Vega]
ICGC DataPortalENSG00000081692
TCGA cBioPortalJMJD4
AceView (NCBI)JMJD4
Genatlas (Paris)JMJD4
WikiGenes65094
SOURCE (Princeton)JMJD4
Genetics Home Reference (NIH)JMJD4
Genomic and cartography
GoldenPath hg38 (UCSC)JMJD4  -     chr1:227731189-227735411 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JMJD4  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblJMJD4 - 1q42.13 [CytoView hg19]  JMJD4 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIJMJD4 [Mapview hg19]  JMJD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA594981 AK022579 AK023030 AK026908 BC011928
RefSeq transcript (Entrez)NM_001161465 NM_023007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JMJD4
Cluster EST : UnigeneHs.745334 [ NCBI ]
CGAP (NCI)Hs.745334
Alternative Splicing GalleryENSG00000081692
Gene ExpressionJMJD4 [ NCBI-GEO ]   JMJD4 [ EBI - ARRAY_EXPRESS ]   JMJD4 [ SEEK ]   JMJD4 [ MEM ]
Gene Expression Viewer (FireBrowse)JMJD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65094
GTEX Portal (Tissue expression)JMJD4
Human Protein AtlasENSG00000081692-JMJD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9V9
Splice isoforms : SwissVarQ9H9V9
PhosPhoSitePlusQ9H9V9
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)   
Domains : Interpro (EBI)JmjC_dom   
Domain families : Pfam (Sanger)JmjC (PF02373)   
Domain families : Pfam (NCBI)pfam02373   
Domain families : Smart (EMBL)JmjC (SM00558)  
Conserved Domain (NCBI)JMJD4
DMDM Disease mutations65094
Blocks (Seattle)JMJD4
SuperfamilyQ9H9V9
Human Protein Atlas [tissue]ENSG00000081692-JMJD4 [tissue]
Peptide AtlasQ9H9V9
HPRD07774
IPIIPI00011132   IPI00549346   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9V9
IntAct (EBI)Q9H9V9
FunCoupENSG00000081692
BioGRIDJMJD4
STRING (EMBL)JMJD4
ZODIACJMJD4
Ontologies - Pathways
QuickGOQ9H9V9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkJMJD4
Atlas of Cancer Signalling NetworkJMJD4
Wikipedia pathwaysJMJD4
Orthology - Evolution
OrthoDB65094
GeneTree (enSembl)ENSG00000081692
Phylogenetic Trees/Animal Genes : TreeFamJMJD4
HOVERGENQ9H9V9
HOGENOMQ9H9V9
Homologs : HomoloGeneJMJD4
Homology/Alignments : Family Browser (UCSC)JMJD4
Gene fusions - Rearrangements
Tumor Fusion PortalJMJD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJMJD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JMJD4
dbVarJMJD4
ClinVarJMJD4
1000_GenomesJMJD4 
Exome Variant ServerJMJD4
ExAC (Exome Aggregation Consortium)ENSG00000081692
GNOMAD BrowserENSG00000081692
Genetic variants : HAPMAP65094
Genomic Variants (DGV)JMJD4 [DGVbeta]
DECIPHERJMJD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJMJD4 
Mutations
ICGC Data PortalJMJD4 
TCGA Data PortalJMJD4 
Broad Tumor PortalJMJD4
OASIS PortalJMJD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJMJD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJMJD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JMJD4
DgiDB (Drug Gene Interaction Database)JMJD4
DoCM (Curated mutations)JMJD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JMJD4 (select a term)
intoGenJMJD4
Cancer3DJMJD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETJMJD4
MedgenJMJD4
Genetic Testing Registry JMJD4
NextProtQ9H9V9 [Medical]
TSGene65094
GENETestsJMJD4
Target ValidationJMJD4
Huge Navigator JMJD4 [HugePedia]
snp3D : Map Gene to Disease65094
BioCentury BCIQJMJD4
ClinGenJMJD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65094
Chemical/Pharm GKB GenePA142671643
Clinical trialJMJD4
Miscellaneous
canSAR (ICR)JMJD4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJMJD4
EVEXJMJD4
GoPubMedJMJD4
iHOPJMJD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:18:23 CET 2017

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