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JMJD7 (jumonji domain containing 7)

Identity

Other alias-
HGNC (Hugo) JMJD7
LocusID (NCBI) 100137047
Atlas_Id 64720
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 41828085 and ends at 41837587 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JMJD7 (15q15.1) / PLA2G4B (15q15.1)SPG11 (15q21.1) / JMJD7 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JMJD7   34397
Cards
Entrez_Gene (NCBI)JMJD7  100137047  jumonji domain containing 7
Aliases
GeneCards (Weizmann)JMJD7
Ensembl hg19 (Hinxton)ENSG00000243789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243789 [Gene_View]  chr15:41828085-41837587 [Contig_View]  JMJD7 [Vega]
ICGC DataPortalENSG00000243789
TCGA cBioPortalJMJD7
AceView (NCBI)JMJD7
Genatlas (Paris)JMJD7
WikiGenes100137047
SOURCE (Princeton)JMJD7
Genetics Home Reference (NIH)JMJD7
Genomic and cartography
GoldenPath hg38 (UCSC)JMJD7  -     chr15:41828085-41837587 +  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JMJD7  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblJMJD7 - 15q15.1 [CytoView hg19]  JMJD7 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIJMJD7 [Mapview hg19]  JMJD7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000550 AK000663 AK000814 AK225503 AK289833
RefSeq transcript (Entrez)NM_001114632
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JMJD7
Cluster EST : UnigeneHs.198161 [ NCBI ]
CGAP (NCI)Hs.198161
Alternative Splicing GalleryENSG00000243789
Gene ExpressionJMJD7 [ NCBI-GEO ]   JMJD7 [ EBI - ARRAY_EXPRESS ]   JMJD7 [ SEEK ]   JMJD7 [ MEM ]
Gene Expression Viewer (FireBrowse)JMJD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100137047
GTEX Portal (Tissue expression)JMJD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C870   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C870  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C870
Splice isoforms : SwissVarP0C870
PhosPhoSitePlusP0C870
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)   
Domains : Interpro (EBI)JmjC_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)JmjC (SM00558)  
Conserved Domain (NCBI)JMJD7
DMDM Disease mutations100137047
Blocks (Seattle)JMJD7
SuperfamilyP0C870
Human Protein AtlasENSG00000243789
Peptide AtlasP0C870
Protein Interaction databases
DIP (DOE-UCLA)P0C870
IntAct (EBI)P0C870
FunCoupENSG00000243789
BioGRIDJMJD7
STRING (EMBL)JMJD7
ZODIACJMJD7
Ontologies - Pathways
QuickGOP0C870
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkJMJD7
Atlas of Cancer Signalling NetworkJMJD7
Wikipedia pathwaysJMJD7
Orthology - Evolution
OrthoDB100137047
GeneTree (enSembl)ENSG00000243789
Phylogenetic Trees/Animal Genes : TreeFamJMJD7
HOVERGENP0C870
HOGENOMP0C870
Homologs : HomoloGeneJMJD7
Homology/Alignments : Family Browser (UCSC)JMJD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJMJD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JMJD7
dbVarJMJD7
ClinVarJMJD7
1000_GenomesJMJD7 
Exome Variant ServerJMJD7
ExAC (Exome Aggregation Consortium)JMJD7 (select the gene name)
Genetic variants : HAPMAP100137047
Genomic Variants (DGV)JMJD7 [DGVbeta]
DECIPHERJMJD7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJMJD7 
Mutations
ICGC Data PortalJMJD7 
TCGA Data PortalJMJD7 
Broad Tumor PortalJMJD7
OASIS PortalJMJD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJMJD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJMJD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JMJD7
DgiDB (Drug Gene Interaction Database)JMJD7
DoCM (Curated mutations)JMJD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JMJD7 (select a term)
intoGenJMJD7
Cancer3DJMJD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenJMJD7
Genetic Testing Registry JMJD7
NextProtP0C870 [Medical]
TSGene100137047
GENETestsJMJD7
Target ValidationJMJD7
Huge Navigator JMJD7 [HugePedia]
snp3D : Map Gene to Disease100137047
BioCentury BCIQJMJD7
ClinGenJMJD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100137047
Chemical/Pharm GKB GenePA162392530
Clinical trialJMJD7
Miscellaneous
canSAR (ICR)JMJD7 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJMJD7
EVEXJMJD7
GoPubMedJMJD7
iHOPJMJD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:27 CEST 2017

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