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JMJD8 (jumonji domain containing 8)

Identity

Alias_namesC16orf20
chromosome 16 open reading frame 20
Other aliasPP14397
HGNC (Hugo) JMJD8
LocusID (NCBI) 339123
Atlas_Id 64722
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 681667 and ends at 684439 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JMJD8   14148
Cards
Entrez_Gene (NCBI)JMJD8  339123  jumonji domain containing 8
AliasesC16orf20; PP14397
GeneCards (Weizmann)JMJD8
Ensembl hg19 (Hinxton)ENSG00000161999 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161999 [Gene_View]  chr16:681667-684439 [Contig_View]  JMJD8 [Vega]
ICGC DataPortalENSG00000161999
TCGA cBioPortalJMJD8
AceView (NCBI)JMJD8
Genatlas (Paris)JMJD8
WikiGenes339123
SOURCE (Princeton)JMJD8
Genetics Home Reference (NIH)JMJD8
Genomic and cartography
GoldenPath hg38 (UCSC)JMJD8  -     chr16:681667-684439 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JMJD8  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblJMJD8 - 16p13.3 [CytoView hg19]  JMJD8 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIJMJD8 [Mapview hg19]  JMJD8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF370420 AI022970 AI370749 AL524336 AL524922
RefSeq transcript (Entrez)NM_001005920 NM_001323918 NM_001323919 NM_001323920 NM_001323922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JMJD8
Cluster EST : UnigeneHs.533771 [ NCBI ]
CGAP (NCI)Hs.533771
Alternative Splicing GalleryENSG00000161999
Gene ExpressionJMJD8 [ NCBI-GEO ]   JMJD8 [ EBI - ARRAY_EXPRESS ]   JMJD8 [ SEEK ]   JMJD8 [ MEM ]
Gene Expression Viewer (FireBrowse)JMJD8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339123
GTEX Portal (Tissue expression)JMJD8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S16
Splice isoforms : SwissVarQ96S16
PhosPhoSitePlusQ96S16
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)   
Domains : Interpro (EBI)JmjC_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)JMJD8
DMDM Disease mutations339123
Blocks (Seattle)JMJD8
SuperfamilyQ96S16
Human Protein AtlasENSG00000161999
Peptide AtlasQ96S16
HPRD17351
IPIIPI00045473   IPI00900374   IPI00942972   
Protein Interaction databases
DIP (DOE-UCLA)Q96S16
IntAct (EBI)Q96S16
FunCoupENSG00000161999
BioGRIDJMJD8
STRING (EMBL)JMJD8
ZODIACJMJD8
Ontologies - Pathways
QuickGOQ96S16
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkJMJD8
Atlas of Cancer Signalling NetworkJMJD8
Wikipedia pathwaysJMJD8
Orthology - Evolution
OrthoDB339123
GeneTree (enSembl)ENSG00000161999
Phylogenetic Trees/Animal Genes : TreeFamJMJD8
HOVERGENQ96S16
HOGENOMQ96S16
Homologs : HomoloGeneJMJD8
Homology/Alignments : Family Browser (UCSC)JMJD8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJMJD8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JMJD8
dbVarJMJD8
ClinVarJMJD8
1000_GenomesJMJD8 
Exome Variant ServerJMJD8
ExAC (Exome Aggregation Consortium)JMJD8 (select the gene name)
Genetic variants : HAPMAP339123
Genomic Variants (DGV)JMJD8 [DGVbeta]
DECIPHERJMJD8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJMJD8 
Mutations
ICGC Data PortalJMJD8 
TCGA Data PortalJMJD8 
Broad Tumor PortalJMJD8
OASIS PortalJMJD8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJMJD8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJMJD8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JMJD8
DgiDB (Drug Gene Interaction Database)JMJD8
DoCM (Curated mutations)JMJD8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JMJD8 (select a term)
intoGenJMJD8
Cancer3DJMJD8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenJMJD8
Genetic Testing Registry JMJD8
NextProtQ96S16 [Medical]
TSGene339123
GENETestsJMJD8
Target ValidationJMJD8
Huge Navigator JMJD8 [HugePedia]
snp3D : Map Gene to Disease339123
BioCentury BCIQJMJD8
ClinGenJMJD8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339123
Chemical/Pharm GKB GenePA162392531
Clinical trialJMJD8
Miscellaneous
canSAR (ICR)JMJD8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJMJD8
EVEXJMJD8
GoPubMedJMJD8
iHOPJMJD8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:28 CEST 2017

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