Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

JMY (junction mediating and regulatory protein, p53 cofactor)

Identity

Alias_symbol (synonym)FLJ37870
WHAMM2
Other aliasWHDC1L3
HGNC (Hugo) JMY
LocusID (NCBI) 133746
Atlas_Id 41043
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 79236102 and ends at 79327215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JMY (5q14.1) / DMGDH (5q14.1)JMY (5q14.1) / EPS8L2 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JMY   28916
Cards
Entrez_Gene (NCBI)JMY  133746  junction mediating and regulatory protein, p53 cofactor
AliasesWHAMM2; WHDC1L3
GeneCards (Weizmann)JMY
Ensembl hg19 (Hinxton)ENSG00000152409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152409 [Gene_View]  chr5:79236102-79327215 [Contig_View]  JMY [Vega]
ICGC DataPortalENSG00000152409
TCGA cBioPortalJMY
AceView (NCBI)JMY
Genatlas (Paris)JMY
WikiGenes133746
SOURCE (Princeton)JMY
Genetics Home Reference (NIH)JMY
Genomic and cartography
GoldenPath hg38 (UCSC)JMY  -     chr5:79236102-79327215 +  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JMY  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblJMY - 5q14.1 [CytoView hg19]  JMY - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIJMY [Mapview hg19]  JMY [Mapview hg38]
OMIM604279   
Gene and transcription
Genbank (Entrez)AK092475 AK095189 AL708168 BC130624 BM668734
RefSeq transcript (Entrez)NM_152405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JMY
Cluster EST : UnigeneHs.482605 [ NCBI ]
CGAP (NCI)Hs.482605
Alternative Splicing GalleryENSG00000152409
Gene ExpressionJMY [ NCBI-GEO ]   JMY [ EBI - ARRAY_EXPRESS ]   JMY [ SEEK ]   JMY [ MEM ]
Gene Expression Viewer (FireBrowse)JMY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133746
GTEX Portal (Tissue expression)JMY
Human Protein AtlasENSG00000152409-JMY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9B5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9B5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9B5
Splice isoforms : SwissVarQ8N9B5
PhosPhoSitePlusQ8N9B5
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)Jmy    JMY/WHAMM    JMY/WHAMM_N    WH2_dom   
Domain families : Pfam (Sanger)JMY (PF15871)    WHAMM-JMY_N (PF15920)   
Domain families : Pfam (NCBI)pfam15871    pfam15920   
Conserved Domain (NCBI)JMY
DMDM Disease mutations133746
Blocks (Seattle)JMY
SuperfamilyQ8N9B5
Human Protein Atlas [tissue]ENSG00000152409-JMY [tissue]
Peptide AtlasQ8N9B5
HPRD05045
IPIIPI00182739   IPI00889171   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9B5
IntAct (EBI)Q8N9B5
FunCoupENSG00000152409
BioGRIDJMY
STRING (EMBL)JMY
ZODIACJMY
Ontologies - Pathways
QuickGOQ8N9B5
Ontology : AmiGOtranscription coactivator activity  transcription coactivator activity  actin binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytoskeleton  DNA repair  regulation of transcription from RNA polymerase II promoter  cell cycle arrest  cell cycle arrest  cell leading edge  Arp2/3 complex-mediated actin nucleation  Arp2/3 complex-mediated actin nucleation  positive regulation of apoptotic process  positive regulation of apoptotic process  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of sequence-specific DNA binding transcription factor activity  'de novo' actin filament nucleation  'de novo' actin filament nucleation  actin polymerization-dependent cell motility  Arp2/3 complex binding  intrinsic apoptotic signaling pathway by p53 class mediator  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBItranscription coactivator activity  transcription coactivator activity  actin binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytoskeleton  DNA repair  regulation of transcription from RNA polymerase II promoter  cell cycle arrest  cell cycle arrest  cell leading edge  Arp2/3 complex-mediated actin nucleation  Arp2/3 complex-mediated actin nucleation  positive regulation of apoptotic process  positive regulation of apoptotic process  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of sequence-specific DNA binding transcription factor activity  'de novo' actin filament nucleation  'de novo' actin filament nucleation  actin polymerization-dependent cell motility  Arp2/3 complex binding  intrinsic apoptotic signaling pathway by p53 class mediator  regulation of signal transduction by p53 class mediator  
NDEx NetworkJMY
Atlas of Cancer Signalling NetworkJMY
Wikipedia pathwaysJMY
Orthology - Evolution
OrthoDB133746
GeneTree (enSembl)ENSG00000152409
Phylogenetic Trees/Animal Genes : TreeFamJMY
HOVERGENQ8N9B5
HOGENOMQ8N9B5
Homologs : HomoloGeneJMY
Homology/Alignments : Family Browser (UCSC)JMY
Gene fusions - Rearrangements
Fusion : MitelmanJMY/DMGDH [5q14.1/5q14.1]  
Fusion: Tumor Portal JMY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJMY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JMY
dbVarJMY
ClinVarJMY
1000_GenomesJMY 
Exome Variant ServerJMY
ExAC (Exome Aggregation Consortium)ENSG00000152409
GNOMAD BrowserENSG00000152409
Genetic variants : HAPMAP133746
Genomic Variants (DGV)JMY [DGVbeta]
DECIPHERJMY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJMY 
Mutations
ICGC Data PortalJMY 
TCGA Data PortalJMY 
Broad Tumor PortalJMY
OASIS PortalJMY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJMY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJMY
intOGen PortalJMY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JMY
DgiDB (Drug Gene Interaction Database)JMY
DoCM (Curated mutations)JMY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JMY (select a term)
intoGenJMY
Cancer3DJMY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604279   
Orphanet
MedgenJMY
Genetic Testing Registry JMY
NextProtQ8N9B5 [Medical]
TSGene133746
GENETestsJMY
Target ValidationJMY
Huge Navigator JMY [HugePedia]
snp3D : Map Gene to Disease133746
BioCentury BCIQJMY
ClinGenJMY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133746
Chemical/Pharm GKB GenePA164721124
Clinical trialJMY
Miscellaneous
canSAR (ICR)JMY (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJMY
EVEXJMY
GoPubMedJMY
iHOPJMY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:54:58 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.