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JPT1 (Jupiter microtubule associated homolog 1)

Identity

Other aliasARM2
HN1
HN1A
HGNC (Hugo) JPT1
LocusID (NCBI) 51155
Atlas_Id 56784
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75135243 and ends at 75154683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARMC7 17q25.1 / HN1 17q25.1HN1 17q25.1 / GGA3 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JPT1   14569
Cards
Entrez_Gene (NCBI)JPT1  51155  Jupiter microtubule associated homolog 1
AliasesARM2; HN1; HN1A
GeneCards (Weizmann)JPT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:75135243-75154683 [Contig_View]  JPT1 [Vega]
TCGA cBioPortalJPT1
AceView (NCBI)JPT1
Genatlas (Paris)JPT1
WikiGenes51155
SOURCE (Princeton)JPT1
Genetics Home Reference (NIH)JPT1
Genomic and cartography
GoldenPath hg38 (UCSC)JPT1  -     chr17:75135243-75154683 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JPT1  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblJPT1 - 17q25.1 [CytoView hg19]  JPT1 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIJPT1 [Mapview hg19]  JPT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF060925 AF086910 AF177862 AF266846 AK223321
RefSeq transcript (Entrez)NM_001002032 NM_001002033 NM_001288609 NM_001288610 NM_001288611 NM_016185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JPT1
Cluster EST : UnigeneHs.532803 [ NCBI ]
CGAP (NCI)Hs.532803
Gene ExpressionJPT1 [ NCBI-GEO ]   JPT1 [ EBI - ARRAY_EXPRESS ]   JPT1 [ SEEK ]   JPT1 [ MEM ]
Gene Expression Viewer (FireBrowse)JPT1 [ Firebrowse - Broad ]
SOURCE (Princetoj)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51155
GTEX Portal (Tissue expression)JPT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK76
Splice isoforms : SwissVarQ9UK76
PhosPhoSitePlusQ9UK76
Domains : Interpro (EBI)JUPITER/HN1/HN1L   
Domain families : Pfam (Sanger)JUPITER (PF17054)   
Domain families : Pfam (NCBI)pfam17054   
Conserved Domain (NCBI)JPT1
DMDM Disease mutations51155
Blocks (Seattle)JPT1
SuperfamilyQ9UK76
Peptide AtlasQ9UK76
IPIIPI00007764   IPI00384857   IPI00447316   IPI01016073   IPI00385961   IPI00916337   IPI00917313   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK76
IntAct (EBI)Q9UK76
BioGRIDJPT1
STRING (EMBL)JPT1
ZODIACJPT1
Ontologies - Pathways
QuickGOQ9UK76
Ontology : AmiGOnucleus  nucleolus  nuclear membrane  
Ontology : EGO-EBInucleus  nucleolus  nuclear membrane  
NDEx NetworkJPT1
Atlas of Cancer Signalling NetworkJPT1
Wikipedia pathwaysJPT1
Orthology - Evolution
OrthoDB51155
Phylogenetic Trees/Animal Genes : TreeFamJPT1
HOVERGENQ9UK76
HOGENOMQ9UK76
Homologs : HomoloGeneJPT1
Homology/Alignments : Family Browser (UCSC)JPT1
Gene fusions - Rearrangements
Fusion : MitelmanARMC7/HN1 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanHN1/CALM1 [17q25.1/14q32.11]  [t(14;17)(q32;q25)]  
Fusion : MitelmanHN1/GGA3 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanHN1/USH1G [17q25.1/17q25.1]  [del(17)(q25)]  [del(17)(q25q25)]  
Fusion: TCGAARMC7 17q25.1 HN1 17q25.1 LUSC
Fusion: TCGAHN1 17q25.1 GGA3 17q25.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJPT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JPT1
dbVarJPT1
ClinVarJPT1
1000_GenomesJPT1 
Exome Variant ServerJPT1
ExAC (Exome Aggregation Consortium)JPT1 (select the gene name)
Genetic variants : HAPMAP51155
Genomic Variants (DGV)JPT1 [DGVbeta]
DECIPHERJPT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJPT1 
Mutations
ICGC Data PortalJPT1 
TCGA Data PortalJPT1 
Broad Tumor PortalJPT1
OASIS PortalJPT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDJPT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JPT1
DgiDB (Drug Gene Interaction Database)JPT1
DoCM (Curated mutations)JPT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JPT1 (select a term)
intoGenJPT1
Cancer3DJPT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenJPT1
Genetic Testing Registry JPT1
NextProtQ9UK76 [Medical]
TSGene51155
GENETestsJPT1
Target ValidationJPT1
Huge Navigator JPT1 [HugePedia]
snp3D : Map Gene to Disease51155
BioCentury BCIQJPT1
ClinGenJPT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51155
Chemical/Pharm GKB GenePA29347
Clinical trialJPT1
Miscellaneous
canSAR (ICR)JPT1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJPT1
EVEXJPT1
GoPubMedJPT1
iHOPJPT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:56:44 CEST 2017

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