Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

JPT2 (Jupiter microtubule associated homolog 2)

Identity

Alias_namesC16orf34
HN1L
chromosome 16 open reading frame 34
hematological and neurological expressed 1-like
hematological and neurological expressed 1 like
Alias_symbol (synonym)FLJ13092
L11
KIAA1426
Other alias
HGNC (Hugo) JPT2
LocusID (NCBI) 90861
Atlas_Id 80235
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1678277 and ends at 1702072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JPT2   14137
Cards
Entrez_Gene (NCBI)JPT2  90861  Jupiter microtubule associated homolog 2
AliasesC16orf34; HN1L; L11
GeneCards (Weizmann)JPT2
Ensembl hg19 (Hinxton)ENSG00000206053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206053 [Gene_View]  chr16:1678277-1702072 [Contig_View]  JPT2 [Vega]
ICGC DataPortalENSG00000206053
TCGA cBioPortalJPT2
AceView (NCBI)JPT2
Genatlas (Paris)JPT2
WikiGenes90861
SOURCE (Princeton)JPT2
Genetics Home Reference (NIH)JPT2
Genomic and cartography
GoldenPath hg38 (UCSC)JPT2  -     chr16:1678277-1702072 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JPT2  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblJPT2 - 16p13.3 [CytoView hg19]  JPT2 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIJPT2 [Mapview hg19]  JPT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023154 AK296888 AK296998 AK303927 AK304025
RefSeq transcript (Entrez)NM_144570
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JPT2
Cluster EST : UnigeneHs.513261 [ NCBI ]
CGAP (NCI)Hs.513261
Alternative Splicing GalleryENSG00000206053
Gene ExpressionJPT2 [ NCBI-GEO ]   JPT2 [ EBI - ARRAY_EXPRESS ]   JPT2 [ SEEK ]   JPT2 [ MEM ]
Gene Expression Viewer (FireBrowse)JPT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90861
GTEX Portal (Tissue expression)JPT2
Human Protein AtlasENSG00000206053-JPT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H910   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H910  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H910
Splice isoforms : SwissVarQ9H910
PhosPhoSitePlusQ9H910
Domains : Interpro (EBI)JUPITER/HN1/HN1L   
Domain families : Pfam (Sanger)JUPITER (PF17054)   
Domain families : Pfam (NCBI)pfam17054   
Conserved Domain (NCBI)JPT2
DMDM Disease mutations90861
Blocks (Seattle)JPT2
SuperfamilyQ9H910
Human Protein Atlas [tissue]ENSG00000206053-JPT2 [tissue]
Peptide AtlasQ9H910
IPIIPI00027397   IPI00607796   IPI00909743   IPI00909195   
Protein Interaction databases
DIP (DOE-UCLA)Q9H910
IntAct (EBI)Q9H910
FunCoupENSG00000206053
BioGRIDJPT2
STRING (EMBL)JPT2
ZODIACJPT2
Ontologies - Pathways
QuickGOQ9H910
Ontology : AmiGOnucleus  cytosol  plasma membrane  
Ontology : EGO-EBInucleus  cytosol  plasma membrane  
NDEx NetworkJPT2
Atlas of Cancer Signalling NetworkJPT2
Wikipedia pathwaysJPT2
Orthology - Evolution
OrthoDB90861
GeneTree (enSembl)ENSG00000206053
Phylogenetic Trees/Animal Genes : TreeFamJPT2
HOVERGENQ9H910
HOGENOMQ9H910
Homologs : HomoloGeneJPT2
Homology/Alignments : Family Browser (UCSC)JPT2
Gene fusions - Rearrangements
Tumor Fusion PortalJPT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJPT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JPT2
dbVarJPT2
ClinVarJPT2
1000_GenomesJPT2 
Exome Variant ServerJPT2
ExAC (Exome Aggregation Consortium)ENSG00000206053
GNOMAD BrowserENSG00000206053
Genetic variants : HAPMAP90861
Genomic Variants (DGV)JPT2 [DGVbeta]
DECIPHERJPT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJPT2 
Mutations
ICGC Data PortalJPT2 
TCGA Data PortalJPT2 
Broad Tumor PortalJPT2
OASIS PortalJPT2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDJPT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JPT2
DgiDB (Drug Gene Interaction Database)JPT2
DoCM (Curated mutations)JPT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JPT2 (select a term)
intoGenJPT2
Cancer3DJPT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETJPT2
MedgenJPT2
Genetic Testing Registry JPT2
NextProtQ9H910 [Medical]
TSGene90861
GENETestsJPT2
Target ValidationJPT2
Huge Navigator JPT2 [HugePedia]
snp3D : Map Gene to Disease90861
BioCentury BCIQJPT2
ClinGenJPT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90861
Chemical/Pharm GKB GenePA162391043
Clinical trialJPT2
Miscellaneous
canSAR (ICR)JPT2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJPT2
EVEXJPT2
GoPubMedJPT2
iHOPJPT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:23 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.