Atlas of Genetics and Cytogenetics in Oncology and Haematology


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JPT2 (Jupiter microtubule associated homolog 2)

Identity

Alias (NCBI)C16orf34
HN1L
L11
HGNC (Hugo) JPT2
HGNC Alias symbFLJ13092
L11
KIAA1426
HGNC Previous nameC16orf34
 HN1L
HGNC Previous namechromosome 16 open reading frame 34
 hematological and neurological expressed 1-like
 hematological and neurological expressed 1 like
LocusID (NCBI) 90861
Atlas_Id 57967
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1678279 and ends at 1702086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)JPT2   14137
Cards
Entrez_Gene (NCBI)JPT2    Jupiter microtubule associated homolog 2
AliasesC16orf34; HN1L; L11
GeneCards (Weizmann)JPT2
Ensembl hg19 (Hinxton)ENSG00000206053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206053 [Gene_View]  ENSG00000206053 [Sequence]  chr16:1678279-1702086 [Contig_View]  JPT2 [Vega]
ICGC DataPortalENSG00000206053
TCGA cBioPortalJPT2
AceView (NCBI)JPT2
Genatlas (Paris)JPT2
SOURCE (Princeton)JPT2
Genetics Home Reference (NIH)JPT2
Genomic and cartography
GoldenPath hg38 (UCSC)JPT2  -     chr16:1678279-1702086 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JPT2  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathJPT2 - 16p13.3 [CytoView hg19]  JPT2 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000206053
Genome Data Viewer NCBIJPT2 [Mapview hg19]  
OMIM619241   
Gene and transcription
Genbank (Entrez)AK023154 AK296888 AK296998 AK303927 AK304025
RefSeq transcript (Entrez)NM_144570
Consensus coding sequences : CCDS (NCBI)JPT2
Gene ExpressionJPT2 [ NCBI-GEO ]   JPT2 [ EBI - ARRAY_EXPRESS ]   JPT2 [ SEEK ]   JPT2 [ MEM ]
Gene Expression Viewer (FireBrowse)JPT2 [ Firebrowse - Broad ]
GenevisibleExpression of JPT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90861
GTEX Portal (Tissue expression)JPT2
Human Protein AtlasENSG00000206053-JPT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H910   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H910  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H910
PhosPhoSitePlusQ9H910
Domains : Interpro (EBI)JUPITER   
Domain families : Pfam (Sanger)JUPITER (PF17054)   
Domain families : Pfam (NCBI)pfam17054   
Conserved Domain (NCBI)JPT2
SuperfamilyQ9H910
AlphaFold pdb e-kbQ9H910   
Human Protein Atlas [tissue]ENSG00000206053-JPT2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9H910
IntAct (EBI)Q9H910
BioGRIDJPT2
STRING (EMBL)JPT2
ZODIACJPT2
Ontologies - Pathways
QuickGOQ9H910
Ontology : AmiGOnucleus  cytosol  plasma membrane  
Ontology : EGO-EBInucleus  cytosol  plasma membrane  
NDEx NetworkJPT2
Atlas of Cancer Signalling NetworkJPT2
Wikipedia pathwaysJPT2
Orthology - Evolution
OrthoDB90861
GeneTree (enSembl)ENSG00000206053
Phylogenetic Trees/Animal Genes : TreeFamJPT2
Homologs : HomoloGeneJPT2
Homology/Alignments : Family Browser (UCSC)JPT2
Gene fusions - Rearrangements
Fusion : QuiverJPT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJPT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JPT2
dbVarJPT2
ClinVarJPT2
MonarchJPT2
1000_GenomesJPT2 
Exome Variant ServerJPT2
GNOMAD BrowserENSG00000206053
Varsome BrowserJPT2
ACMGJPT2 variants
VarityQ9H910
Genomic Variants (DGV)JPT2 [DGVbeta]
DECIPHERJPT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJPT2 
Mutations
ICGC Data PortalJPT2 
TCGA Data PortalJPT2 
Broad Tumor PortalJPT2
OASIS PortalJPT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJPT2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DJPT2
Mutations and Diseases : HGMDJPT2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaJPT2
DgiDB (Drug Gene Interaction Database)JPT2
DoCM (Curated mutations)JPT2
CIViC (Clinical Interpretations of Variants in Cancer)JPT2
Cancer3DJPT2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619241   
Orphanet
DisGeNETJPT2
MedgenJPT2
Genetic Testing Registry JPT2
NextProtQ9H910 [Medical]
GENETestsJPT2
Target ValidationJPT2
Huge Navigator JPT2 [HugePedia]
ClinGenJPT2
Clinical trials, drugs, therapy
MyCancerGenomeJPT2
Protein Interactions : CTDJPT2
Pharm GKB GenePA162391043
PharosQ9H910
Clinical trialJPT2
Miscellaneous
canSAR (ICR)JPT2
HarmonizomeJPT2
DataMed IndexJPT2
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXJPT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:14:31 CEST 2021

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