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JRK (Jrk helix-turn-helix protein)

Identity

Other aliasJH8
jerky
HGNC (Hugo) JRK
LocusID (NCBI) 8629
Atlas_Id 57151
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142658407 and ends at 142665590 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JRK   6199
Cards
Entrez_Gene (NCBI)JRK  8629  Jrk helix-turn-helix protein
AliasesJH8; jerky
GeneCards (Weizmann)JRK
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:142658407-142665590 [Contig_View]  JRK [Vega]
TCGA cBioPortalJRK
AceView (NCBI)JRK
Genatlas (Paris)JRK
WikiGenes8629
SOURCE (Princeton)JRK
Genetics Home Reference (NIH)JRK
Genomic and cartography
GoldenPath hg38 (UCSC)JRK  -     chr8:142658407-142665590 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JRK  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblJRK - 8q24.3 [CytoView hg19]  JRK - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIJRK [Mapview hg19]  JRK [Mapview hg38]
OMIM603210   
Gene and transcription
Genbank (Entrez)AB209002 AF072467 AF072468 AK024145 AK024975
RefSeq transcript (Entrez)NM_001077527 NM_001279352 NM_003724
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JRK
Cluster EST : UnigeneHs.683465 [ NCBI ]
CGAP (NCI)Hs.683465
Gene ExpressionJRK [ NCBI-GEO ]   JRK [ EBI - ARRAY_EXPRESS ]   JRK [ SEEK ]   JRK [ MEM ]
Gene Expression Viewer (FireBrowse)JRK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8629
GTEX Portal (Tissue expression)JRK
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75564   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75564  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75564
Splice isoforms : SwissVarO75564
PhosPhoSitePlusO75564
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)   
Domains : Interpro (EBI)DDE_SF_endonuclease_dom    Homeobox-like    HTH_CenpB_DNA-bd_dom   
Domain families : Pfam (Sanger)DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)JRK
DMDM Disease mutations8629
Blocks (Seattle)JRK
SuperfamilyO75564
Peptide AtlasO75564
IPIIPI00794896   IPI00816279   
Protein Interaction databases
DIP (DOE-UCLA)O75564
IntAct (EBI)O75564
BioGRIDJRK
STRING (EMBL)JRK
ZODIACJRK
Ontologies - Pathways
QuickGOO75564
Ontology : AmiGOmolecular_function  DNA binding  protein binding  cellular_component  nucleus  biological_process  
Ontology : EGO-EBImolecular_function  DNA binding  protein binding  cellular_component  nucleus  biological_process  
NDEx NetworkJRK
Atlas of Cancer Signalling NetworkJRK
Wikipedia pathwaysJRK
Orthology - Evolution
OrthoDB8629
Phylogenetic Trees/Animal Genes : TreeFamJRK
HOVERGENO75564
HOGENOMO75564
Homologs : HomoloGeneJRK
Homology/Alignments : Family Browser (UCSC)JRK
Gene fusions - Rearrangements
Fusion: Tumor Portal JRK
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJRK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JRK
dbVarJRK
ClinVarJRK
1000_GenomesJRK 
Exome Variant ServerJRK
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP8629
Genomic Variants (DGV)JRK [DGVbeta]
DECIPHERJRK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJRK 
Mutations
ICGC Data PortalJRK 
TCGA Data PortalJRK 
Broad Tumor PortalJRK
OASIS PortalJRK [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDJRK
BioMutasearch JRK
DgiDB (Drug Gene Interaction Database)JRK
DoCM (Curated mutations)JRK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JRK (select a term)
intoGenJRK
Cancer3DJRK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603210   
Orphanet
MedgenJRK
Genetic Testing Registry JRK
NextProtO75564 [Medical]
TSGene8629
GENETestsJRK
Target ValidationJRK
Huge Navigator JRK [HugePedia]
snp3D : Map Gene to Disease8629
BioCentury BCIQJRK
ClinGenJRK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8629
Chemical/Pharm GKB GenePA30001
Clinical trialJRK
Miscellaneous
canSAR (ICR)JRK (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJRK
EVEXJRK
GoPubMedJRK
iHOPJRK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:54:59 CET 2017

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