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JRKL (JRK-like)

Identity

Alias_nameserky (mouse) homolog-like
jerky homolog-like (mouse)
Alias_symbol (synonym)HHMJG
Other alias
HGNC (Hugo) JRKL
LocusID (NCBI) 8690
Atlas_Id 64729
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 96123158 and ends at 96126727 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JRKL   6200
Cards
Entrez_Gene (NCBI)JRKL  8690  JRK-like
AliasesHHMJG
GeneCards (Weizmann)JRKL
Ensembl hg19 (Hinxton)ENSG00000183340 [Gene_View]  chr11:96123158-96126727 [Contig_View]  JRKL [Vega]
Ensembl hg38 (Hinxton)ENSG00000183340 [Gene_View]  chr11:96123158-96126727 [Contig_View]  JRKL [Vega]
ICGC DataPortalENSG00000183340
TCGA cBioPortalJRKL
AceView (NCBI)JRKL
Genatlas (Paris)JRKL
WikiGenes8690
SOURCE (Princeton)JRKL
Genetics Home Reference (NIH)JRKL
Genomic and cartography
GoldenPath hg19 (UCSC)JRKL  -     chr11:96123158-96126727 +  11q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)JRKL  -     11q21   [Description]    (hg38-Dec_2013)
EnsemblJRKL - 11q21 [CytoView hg19]  JRKL - 11q21 [CytoView hg38]
Mapping of homologs : NCBIJRKL [Mapview hg19]  JRKL [Mapview hg38]
OMIM603211   
Gene and transcription
Genbank (Entrez)AF004715 AK290579 AK314216 BC031306 BC109202
RefSeq transcript (Entrez)NM_001261833 NM_003772
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929380
Consensus coding sequences : CCDS (NCBI)JRKL
Cluster EST : UnigeneHs.745352 [ NCBI ]
CGAP (NCI)Hs.745352
Alternative Splicing GalleryENSG00000183340
Gene ExpressionJRKL [ NCBI-GEO ]   JRKL [ EBI - ARRAY_EXPRESS ]   JRKL [ SEEK ]   JRKL [ MEM ]
Gene Expression Viewer (FireBrowse)JRKL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8690
GTEX Portal (Tissue expression)JRKL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4A0
Splice isoforms : SwissVarQ9Y4A0
PhosPhoSitePlusQ9Y4A0
Domaine pattern : Prosite (Expaxy)HTH_CENPB (PS51253)    HTH_PSQ (PS50960)   
Domains : Interpro (EBI)DDE_SF_endonuclease_CENPB-like    Homeodomain-like    HTH_CenpB_DNA-bd_dom    HTH_Psq   
Domain families : Pfam (Sanger)CENP-B_N (PF04218)    DDE_1 (PF03184)    HTH_Tnp_Tc5 (PF03221)   
Domain families : Pfam (NCBI)pfam04218    pfam03184    pfam03221   
Domain families : Smart (EMBL)CENPB (SM00674)  
Conserved Domain (NCBI)JRKL
DMDM Disease mutations8690
Blocks (Seattle)JRKL
SuperfamilyQ9Y4A0
Human Protein AtlasENSG00000183340
Peptide AtlasQ9Y4A0
HPRD04443
IPIIPI00216634   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4A0
IntAct (EBI)Q9Y4A0
FunCoupENSG00000183340
BioGRIDJRKL
STRING (EMBL)JRKL
ZODIACJRKL
Ontologies - Pathways
QuickGOQ9Y4A0
Ontology : AmiGODNA binding  nucleus  central nervous system development  
Ontology : EGO-EBIDNA binding  nucleus  central nervous system development  
NDEx NetworkJRKL
Atlas of Cancer Signalling NetworkJRKL
Wikipedia pathwaysJRKL
Orthology - Evolution
OrthoDB8690
GeneTree (enSembl)ENSG00000183340
Phylogenetic Trees/Animal Genes : TreeFamJRKL
HOVERGENQ9Y4A0
HOGENOMQ9Y4A0
Homologs : HomoloGeneJRKL
Homology/Alignments : Family Browser (UCSC)JRKL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJRKL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JRKL
dbVarJRKL
ClinVarJRKL
1000_GenomesJRKL 
Exome Variant ServerJRKL
ExAC (Exome Aggregation Consortium)JRKL (select the gene name)
Genetic variants : HAPMAP8690
Genomic Variants (DGV)JRKL [DGVbeta]
DECIPHER (Syndromes)11:96123158-96126727  ENSG00000183340
CONAN: Copy Number AnalysisJRKL 
Mutations
ICGC Data PortalJRKL 
TCGA Data PortalJRKL 
Broad Tumor PortalJRKL
OASIS PortalJRKL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJRKL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJRKL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JRKL
DgiDB (Drug Gene Interaction Database)JRKL
DoCM (Curated mutations)JRKL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JRKL (select a term)
intoGenJRKL
Cancer3DJRKL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603211   
Orphanet
MedgenJRKL
Genetic Testing Registry JRKL
NextProtQ9Y4A0 [Medical]
TSGene8690
GENETestsJRKL
Huge Navigator JRKL [HugePedia]
snp3D : Map Gene to Disease8690
BioCentury BCIQJRKL
ClinGenJRKL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8690
Chemical/Pharm GKB GenePA30002
Clinical trialJRKL
Miscellaneous
canSAR (ICR)JRKL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJRKL
EVEXJRKL
GoPubMedJRKL
iHOPJRKL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:09:14 CET 2017

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