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KANK3 (KN motif and ankyrin repeat domains 3)

Identity

Alias_namesANKRD47
ankyrin repeat domain 47
Alias_symbol (synonym)FLJ46061
Other alias
HGNC (Hugo) KANK3
LocusID (NCBI) 256949
Atlas_Id 64735
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8387468 and ends at 8408146 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KANK3 (19p13.2) / SPC24 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KANK3   24796
Cards
Entrez_Gene (NCBI)KANK3  256949  KN motif and ankyrin repeat domains 3
AliasesANKRD47
GeneCards (Weizmann)KANK3
Ensembl hg19 (Hinxton)ENSG00000186994 [Gene_View]  chr19:8387468-8408146 [Contig_View]  KANK3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186994 [Gene_View]  chr19:8387468-8408146 [Contig_View]  KANK3 [Vega]
ICGC DataPortalENSG00000186994
TCGA cBioPortalKANK3
AceView (NCBI)KANK3
Genatlas (Paris)KANK3
WikiGenes256949
SOURCE (Princeton)KANK3
Genetics Home Reference (NIH)KANK3
Genomic and cartography
GoldenPath hg19 (UCSC)KANK3  -     chr19:8387468-8408146 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KANK3  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblKANK3 - 19p13.2 [CytoView hg19]  KANK3 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIKANK3 [Mapview hg19]  KANK3 [Mapview hg38]
OMIM614611   
Gene and transcription
Genbank (Entrez)AB284126 AK097023 AK128815 AY203940 BC035849
RefSeq transcript (Entrez)NM_198471
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929413
Consensus coding sequences : CCDS (NCBI)KANK3
Cluster EST : UnigeneHs.745036 [ NCBI ]
CGAP (NCI)Hs.745036
Alternative Splicing GalleryENSG00000186994
Gene ExpressionKANK3 [ NCBI-GEO ]   KANK3 [ EBI - ARRAY_EXPRESS ]   KANK3 [ SEEK ]   KANK3 [ MEM ]
Gene Expression Viewer (FireBrowse)KANK3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256949
GTEX Portal (Tissue expression)KANK3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NY19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NY19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NY19
Splice isoforms : SwissVarQ6NY19
PhosPhoSitePlusQ6NY19
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    KN_motif   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    KN_motif (PF12075)   
Domain families : Pfam (NCBI)pfam12796    pfam12075   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)KANK3
DMDM Disease mutations256949
Blocks (Seattle)KANK3
SuperfamilyQ6NY19
Human Protein AtlasENSG00000186994
Peptide AtlasQ6NY19
HPRD13520
IPIIPI00394818   IPI00744564   IPI00428734   
Protein Interaction databases
DIP (DOE-UCLA)Q6NY19
IntAct (EBI)Q6NY19
FunCoupENSG00000186994
BioGRIDKANK3
STRING (EMBL)KANK3
ZODIACKANK3
Ontologies - Pathways
QuickGOQ6NY19
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKANK3
Atlas of Cancer Signalling NetworkKANK3
Wikipedia pathwaysKANK3
Orthology - Evolution
OrthoDB256949
GeneTree (enSembl)ENSG00000186994
Phylogenetic Trees/Animal Genes : TreeFamKANK3
HOVERGENQ6NY19
HOGENOMQ6NY19
Homologs : HomoloGeneKANK3
Homology/Alignments : Family Browser (UCSC)KANK3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKANK3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KANK3
dbVarKANK3
ClinVarKANK3
1000_GenomesKANK3 
Exome Variant ServerKANK3
ExAC (Exome Aggregation Consortium)KANK3 (select the gene name)
Genetic variants : HAPMAP256949
Genomic Variants (DGV)KANK3 [DGVbeta]
DECIPHER (Syndromes)19:8387468-8408146  ENSG00000186994
CONAN: Copy Number AnalysisKANK3 
Mutations
ICGC Data PortalKANK3 
TCGA Data PortalKANK3 
Broad Tumor PortalKANK3
OASIS PortalKANK3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKANK3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKANK3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KANK3
DgiDB (Drug Gene Interaction Database)KANK3
DoCM (Curated mutations)KANK3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KANK3 (select a term)
intoGenKANK3
Cancer3DKANK3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614611   
Orphanet
MedgenKANK3
Genetic Testing Registry KANK3
NextProtQ6NY19 [Medical]
TSGene256949
GENETestsKANK3
Huge Navigator KANK3 [HugePedia]
snp3D : Map Gene to Disease256949
BioCentury BCIQKANK3
ClinGenKANK3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256949
Chemical/Pharm GKB GenePA162392612
Clinical trialKANK3
Miscellaneous
canSAR (ICR)KANK3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKANK3
EVEXKANK3
GoPubMedKANK3
iHOPKANK3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:15 CET 2017

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