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KANK4 (KN motif and ankyrin repeat domains 4)

Identity

Alias_namesANKRD38
ankyrin repeat domain 38
Alias_symbol (synonym)KIAA0172
Other aliasdJ1078M7.1
HGNC (Hugo) KANK4
LocusID (NCBI) 163782
Atlas_Id 64736
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 62236165 and ends at 62319414 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAP4 (3p21.31) / KANK4 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KANK4   27263
Cards
Entrez_Gene (NCBI)KANK4  163782  KN motif and ankyrin repeat domains 4
AliasesANKRD38; dJ1078M7.1
GeneCards (Weizmann)KANK4
Ensembl hg19 (Hinxton)ENSG00000132854 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132854 [Gene_View]  chr1:62236165-62319414 [Contig_View]  KANK4 [Vega]
ICGC DataPortalENSG00000132854
TCGA cBioPortalKANK4
AceView (NCBI)KANK4
Genatlas (Paris)KANK4
WikiGenes163782
SOURCE (Princeton)KANK4
Genetics Home Reference (NIH)KANK4
Genomic and cartography
GoldenPath hg38 (UCSC)KANK4  -     chr1:62236165-62319414 -  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KANK4  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblKANK4 - 1p31.3 [CytoView hg19]  KANK4 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBIKANK4 [Mapview hg19]  KANK4 [Mapview hg38]
OMIM614612   
Gene and transcription
Genbank (Entrez)AB284127 AK091941 AK096259 AK127461 AL832644
RefSeq transcript (Entrez)NM_001320269 NM_181712
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KANK4
Cluster EST : UnigeneHs.283398 [ NCBI ]
CGAP (NCI)Hs.283398
Alternative Splicing GalleryENSG00000132854
Gene ExpressionKANK4 [ NCBI-GEO ]   KANK4 [ EBI - ARRAY_EXPRESS ]   KANK4 [ SEEK ]   KANK4 [ MEM ]
Gene Expression Viewer (FireBrowse)KANK4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163782
GTEX Portal (Tissue expression)KANK4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7N3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7N3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7N3
Splice isoforms : SwissVarQ5T7N3
PhosPhoSitePlusQ5T7N3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    KN_motif   
Domain families : Pfam (Sanger)Ank (PF00023)    KN_motif (PF12075)   
Domain families : Pfam (NCBI)pfam00023    pfam12075   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)KANK4
DMDM Disease mutations163782
Blocks (Seattle)KANK4
SuperfamilyQ5T7N3
Human Protein AtlasENSG00000132854
Peptide AtlasQ5T7N3
HPRD14109
IPIIPI00409638   IPI00480105   IPI00647697   IPI00645736   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7N3
IntAct (EBI)Q5T7N3
FunCoupENSG00000132854
BioGRIDKANK4
STRING (EMBL)KANK4
ZODIACKANK4
Ontologies - Pathways
QuickGOQ5T7N3
Ontology : AmiGOcytosol  microtubule cytoskeleton  
Ontology : EGO-EBIcytosol  microtubule cytoskeleton  
NDEx NetworkKANK4
Atlas of Cancer Signalling NetworkKANK4
Wikipedia pathwaysKANK4
Orthology - Evolution
OrthoDB163782
GeneTree (enSembl)ENSG00000132854
Phylogenetic Trees/Animal Genes : TreeFamKANK4
HOVERGENQ5T7N3
HOGENOMQ5T7N3
Homologs : HomoloGeneKANK4
Homology/Alignments : Family Browser (UCSC)KANK4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKANK4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KANK4
dbVarKANK4
ClinVarKANK4
1000_GenomesKANK4 
Exome Variant ServerKANK4
ExAC (Exome Aggregation Consortium)KANK4 (select the gene name)
Genetic variants : HAPMAP163782
Genomic Variants (DGV)KANK4 [DGVbeta]
DECIPHERKANK4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKANK4 
Mutations
ICGC Data PortalKANK4 
TCGA Data PortalKANK4 
Broad Tumor PortalKANK4
OASIS PortalKANK4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKANK4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKANK4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KANK4
DgiDB (Drug Gene Interaction Database)KANK4
DoCM (Curated mutations)KANK4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KANK4 (select a term)
intoGenKANK4
Cancer3DKANK4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614612   
Orphanet
MedgenKANK4
Genetic Testing Registry KANK4
NextProtQ5T7N3 [Medical]
TSGene163782
GENETestsKANK4
Target ValidationKANK4
Huge Navigator KANK4 [HugePedia]
snp3D : Map Gene to Disease163782
BioCentury BCIQKANK4
ClinGenKANK4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163782
Chemical/Pharm GKB GenePA162392639
Clinical trialKANK4
Miscellaneous
canSAR (ICR)KANK4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKANK4
EVEXKANK4
GoPubMedKANK4
iHOPKANK4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:29 CEST 2017

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