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KANSL2 (KAT8 regulatory NSL complex subunit 2)

Identity

Alias_namesC12orf41
chromosome 12 open reading frame 41
Alias_symbol (synonym)FLJ20436
NSL2
Other alias
HGNC (Hugo) KANSL2
LocusID (NCBI) 54934
Atlas_Id 64739
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 48653211 and ends at 48682252 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD28 (2q33.2) / KANSL2 (12q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KANSL2   26024
Cards
Entrez_Gene (NCBI)KANSL2  54934  KAT8 regulatory NSL complex subunit 2
AliasesC12orf41; NSL2
GeneCards (Weizmann)KANSL2
Ensembl hg19 (Hinxton)ENSG00000139620 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139620 [Gene_View]  chr12:48653211-48682252 [Contig_View]  KANSL2 [Vega]
ICGC DataPortalENSG00000139620
TCGA cBioPortalKANSL2
AceView (NCBI)KANSL2
Genatlas (Paris)KANSL2
WikiGenes54934
SOURCE (Princeton)KANSL2
Genetics Home Reference (NIH)KANSL2
Genomic and cartography
GoldenPath hg38 (UCSC)KANSL2  -     chr12:48653211-48682252 -  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KANSL2  -     12q13.11   [Description]    (hg19-Feb_2009)
EnsemblKANSL2 - 12q13.11 [CytoView hg19]  KANSL2 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIKANSL2 [Mapview hg19]  KANSL2 [Mapview hg38]
OMIM615488   
Gene and transcription
Genbank (Entrez)AK000443 AK022732 AK094528 AL834467 BC009746
RefSeq transcript (Entrez)NM_017822
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KANSL2
Cluster EST : UnigeneHs.505412 [ NCBI ]
CGAP (NCI)Hs.505412
Alternative Splicing GalleryENSG00000139620
Gene ExpressionKANSL2 [ NCBI-GEO ]   KANSL2 [ EBI - ARRAY_EXPRESS ]   KANSL2 [ SEEK ]   KANSL2 [ MEM ]
Gene Expression Viewer (FireBrowse)KANSL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54934
GTEX Portal (Tissue expression)KANSL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9L4
Splice isoforms : SwissVarQ9H9L4
PhosPhoSitePlusQ9H9L4
Domains : Interpro (EBI)NSL2    Potential_DNA-bd   
Domain families : Pfam (Sanger)zf-C3Hc3H (PF13891)   
Domain families : Pfam (NCBI)pfam13891   
Conserved Domain (NCBI)KANSL2
DMDM Disease mutations54934
Blocks (Seattle)KANSL2
PDB (SRS)4CY2   
PDB (PDBSum)4CY2   
PDB (IMB)4CY2   
PDB (RSDB)4CY2   
Structural Biology KnowledgeBase4CY2   
SCOP (Structural Classification of Proteins)4CY2   
CATH (Classification of proteins structures)4CY2   
SuperfamilyQ9H9L4
Human Protein AtlasENSG00000139620
Peptide AtlasQ9H9L4
HPRD07907
IPIIPI00550772   IPI00384112   IPI00015860   IPI01020705   IPI01021399   IPI01021165   IPI01022715   IPI01020847   IPI01021026   IPI01021977   IPI01022126   IPI01022868   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9L4
IntAct (EBI)Q9H9L4
FunCoupENSG00000139620
BioGRIDKANSL2
STRING (EMBL)KANSL2
ZODIACKANSL2
Ontologies - Pathways
QuickGOQ9H9L4
Ontology : AmiGOhistone acetyltransferase complex  protein binding  nucleoplasm  nucleoplasm  cytosol  plasma membrane  actin cytoskeleton  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K16 acetylation  histone acetyltransferase activity (H4-K5 specific)  histone acetyltransferase activity (H4-K8 specific)  histone acetyltransferase activity (H4-K16 specific)  
Ontology : EGO-EBIhistone acetyltransferase complex  protein binding  nucleoplasm  nucleoplasm  cytosol  plasma membrane  actin cytoskeleton  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K16 acetylation  histone acetyltransferase activity (H4-K5 specific)  histone acetyltransferase activity (H4-K8 specific)  histone acetyltransferase activity (H4-K16 specific)  
NDEx NetworkKANSL2
Atlas of Cancer Signalling NetworkKANSL2
Wikipedia pathwaysKANSL2
Orthology - Evolution
OrthoDB54934
GeneTree (enSembl)ENSG00000139620
Phylogenetic Trees/Animal Genes : TreeFamKANSL2
HOVERGENQ9H9L4
HOGENOMQ9H9L4
Homologs : HomoloGeneKANSL2
Homology/Alignments : Family Browser (UCSC)KANSL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKANSL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KANSL2
dbVarKANSL2
ClinVarKANSL2
1000_GenomesKANSL2 
Exome Variant ServerKANSL2
ExAC (Exome Aggregation Consortium)KANSL2 (select the gene name)
Genetic variants : HAPMAP54934
Genomic Variants (DGV)KANSL2 [DGVbeta]
DECIPHERKANSL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKANSL2 
Mutations
ICGC Data PortalKANSL2 
TCGA Data PortalKANSL2 
Broad Tumor PortalKANSL2
OASIS PortalKANSL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKANSL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKANSL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KANSL2
DgiDB (Drug Gene Interaction Database)KANSL2
DoCM (Curated mutations)KANSL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KANSL2 (select a term)
intoGenKANSL2
Cancer3DKANSL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615488   
Orphanet
MedgenKANSL2
Genetic Testing Registry KANSL2
NextProtQ9H9L4 [Medical]
TSGene54934
GENETestsKANSL2
Target ValidationKANSL2
Huge Navigator KANSL2 [HugePedia]
snp3D : Map Gene to Disease54934
BioCentury BCIQKANSL2
ClinGenKANSL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54934
Chemical/Pharm GKB GenePA143485371
Clinical trialKANSL2
Miscellaneous
canSAR (ICR)KANSL2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKANSL2
EVEXKANSL2
GoPubMedKANSL2
iHOPKANSL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:56 CEST 2017

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