Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KANSL3 (KAT8 regulatory NSL complex subunit 3)

Identity

Alias_namesKIAA1310
KIAA1310
Alias_symbol (synonym)FLJ10081
Rcd1
NSL3
Other alias
HGNC (Hugo) KANSL3
LocusID (NCBI) 55683
Atlas_Id 64740
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 97258892 and ends at 97304116 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KANSL3 (2q11.2) / ITPKB (1q42.12)KANSL3 (2q11.2) / TSGA10 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KANSL3   25473
Cards
Entrez_Gene (NCBI)KANSL3  55683  KAT8 regulatory NSL complex subunit 3
AliasesKIAA1310; NSL3; Rcd1
GeneCards (Weizmann)KANSL3
Ensembl hg19 (Hinxton)ENSG00000114982 [Gene_View]  chr2:97258892-97304116 [Contig_View]  KANSL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114982 [Gene_View]  chr2:97258892-97304116 [Contig_View]  KANSL3 [Vega]
ICGC DataPortalENSG00000114982
TCGA cBioPortalKANSL3
AceView (NCBI)KANSL3
Genatlas (Paris)KANSL3
WikiGenes55683
SOURCE (Princeton)KANSL3
Genetics Home Reference (NIH)KANSL3
Genomic and cartography
GoldenPath hg19 (UCSC)KANSL3  -     chr2:97258892-97304116 -  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KANSL3  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblKANSL3 - 2q11.2 [CytoView hg19]  KANSL3 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIKANSL3 [Mapview hg19]  KANSL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA526958 AB037731 AF311326 AI824694 AK000943
RefSeq transcript (Entrez)NM_001115016 NM_017991
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)KANSL3
Cluster EST : UnigeneHs.516341 [ NCBI ]
CGAP (NCI)Hs.516341
Alternative Splicing GalleryENSG00000114982
Gene ExpressionKANSL3 [ NCBI-GEO ]   KANSL3 [ EBI - ARRAY_EXPRESS ]   KANSL3 [ SEEK ]   KANSL3 [ MEM ]
Gene Expression Viewer (FireBrowse)KANSL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55683
GTEX Portal (Tissue expression)KANSL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2N6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2N6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2N6
Splice isoforms : SwissVarQ9P2N6
PhosPhoSitePlusQ9P2N6
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_5    NSL3/Tex30   
Domain families : Pfam (Sanger)Abhydrolase_5 (PF12695)   
Domain families : Pfam (NCBI)pfam12695   
Conserved Domain (NCBI)KANSL3
DMDM Disease mutations55683
Blocks (Seattle)KANSL3
SuperfamilyQ9P2N6
Human Protein AtlasENSG00000114982
Peptide AtlasQ9P2N6
HPRD07643
IPIIPI00845386   IPI00002396   IPI00465061   IPI00845498   IPI00845283   IPI00845505   IPI00845343   IPI00845250   IPI01015094   IPI00925491   IPI01015157   IPI00926657   IPI00926895   IPI00927145   IPI00927364   IPI00927487   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2N6
IntAct (EBI)Q9P2N6
FunCoupENSG00000114982
BioGRIDKANSL3
STRING (EMBL)KANSL3
ZODIACKANSL3
Ontologies - Pathways
QuickGOQ9P2N6
Ontology : AmiGOhistone acetyltransferase complex  nucleus  nucleoplasm  nucleoplasm  nucleolus  chromatin organization  intracellular membrane-bounded organelle  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K16 acetylation  histone acetyltransferase activity (H4-K5 specific)  histone acetyltransferase activity (H4-K8 specific)  histone acetyltransferase activity (H4-K16 specific)  
Ontology : EGO-EBIhistone acetyltransferase complex  nucleus  nucleoplasm  nucleoplasm  nucleolus  chromatin organization  intracellular membrane-bounded organelle  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K16 acetylation  histone acetyltransferase activity (H4-K5 specific)  histone acetyltransferase activity (H4-K8 specific)  histone acetyltransferase activity (H4-K16 specific)  
NDEx NetworkKANSL3
Atlas of Cancer Signalling NetworkKANSL3
Wikipedia pathwaysKANSL3
Orthology - Evolution
OrthoDB55683
GeneTree (enSembl)ENSG00000114982
Phylogenetic Trees/Animal Genes : TreeFamKANSL3
HOVERGENQ9P2N6
HOGENOMQ9P2N6
Homologs : HomoloGeneKANSL3
Homology/Alignments : Family Browser (UCSC)KANSL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKANSL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KANSL3
dbVarKANSL3
ClinVarKANSL3
1000_GenomesKANSL3 
Exome Variant ServerKANSL3
ExAC (Exome Aggregation Consortium)KANSL3 (select the gene name)
Genetic variants : HAPMAP55683
Genomic Variants (DGV)KANSL3 [DGVbeta]
DECIPHER (Syndromes)2:97258892-97304116  ENSG00000114982
CONAN: Copy Number AnalysisKANSL3 
Mutations
ICGC Data PortalKANSL3 
TCGA Data PortalKANSL3 
Broad Tumor PortalKANSL3
OASIS PortalKANSL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKANSL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKANSL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KANSL3
DgiDB (Drug Gene Interaction Database)KANSL3
DoCM (Curated mutations)KANSL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KANSL3 (select a term)
intoGenKANSL3
Cancer3DKANSL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKANSL3
Genetic Testing Registry KANSL3
NextProtQ9P2N6 [Medical]
TSGene55683
GENETestsKANSL3
Huge Navigator KANSL3 [HugePedia]
snp3D : Map Gene to Disease55683
BioCentury BCIQKANSL3
ClinGenKANSL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55683
Chemical/Pharm GKB GenePA162393058
Clinical trialKANSL3
Miscellaneous
canSAR (ICR)KANSL3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKANSL3
EVEXKANSL3
GoPubMedKANSL3
iHOPKANSL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:16 CET 2017

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