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KANTR (KDM5C adjacent transcript)

Identity

Alias_namesLINC01155
long intergenic non-protein coding RNA 1155
Alias_symbol (synonym)Spasm
Other alias
HGNC (Hugo) KANTR
LocusID (NCBI) 102723508
Atlas_Id 64741
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 53094157 and ends at 53148008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KANTR   49510
Cards
Entrez_Gene (NCBI)KANTR  102723508  KDM5C adjacent transcript
AliasesLINC01155; Spasm
GeneCards (Weizmann)KANTR
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:53094157-53148008 [Contig_View]  KANTR [Vega]
TCGA cBioPortalKANTR
AceView (NCBI)KANTR
Genatlas (Paris)KANTR
WikiGenes102723508
SOURCE (Princeton)KANTR
Genetics Home Reference (NIH)KANTR
Genomic and cartography
GoldenPath hg38 (UCSC)KANTR  -     chrX:53094157-53148008 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KANTR  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblKANTR - Xp11.22 [CytoView hg19]  KANTR - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIKANTR [Mapview hg19]  KANTR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL599773 BX353482 CF994433 EF565109
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KANTR
Cluster EST : UnigeneHs.633244 [ NCBI ]
CGAP (NCI)Hs.633244
Gene ExpressionKANTR [ NCBI-GEO ]   KANTR [ EBI - ARRAY_EXPRESS ]   KANTR [ SEEK ]   KANTR [ MEM ]
Gene Expression Viewer (FireBrowse)KANTR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723508
GTEX Portal (Tissue expression)KANTR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KANTR
DMDM Disease mutations102723508
Blocks (Seattle)KANTR
Protein Interaction databases
BioGRIDKANTR
STRING (EMBL)KANTR
ZODIACKANTR
Ontologies - Pathways
Huge Navigator KANTR [HugePedia]
snp3D : Map Gene to Disease102723508
BioCentury BCIQKANTR
ClinGenKANTR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723508
Clinical trialKANTR
Miscellaneous
canSAR (ICR)KANTR (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKANTR
EVEXKANTR
GoPubMedKANTR
iHOPKANTR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:59:49 CET 2017

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