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KATNAL1 (katanin catalytic subunit A1 like 1)

Identity

Alias_nameskatanin p60 subunit A-like 1
katanin p60 subunit A like 1
katanin catalytic subunit A like 1
Alias_symbol (synonym)MGC2599
Other alias-
HGNC (Hugo) KATNAL1
LocusID (NCBI) 84056
Atlas_Id 64742
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 30202630 and ends at 30307054 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KATNAL1 (13q12.3) / WASF3 (13q12.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KATNAL1   28361
Cards
Entrez_Gene (NCBI)KATNAL1  84056  katanin catalytic subunit A1 like 1
Aliases
GeneCards (Weizmann)KATNAL1
Ensembl hg19 (Hinxton)ENSG00000102781 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102781 [Gene_View]  chr13:30202630-30307054 [Contig_View]  KATNAL1 [Vega]
ICGC DataPortalENSG00000102781
TCGA cBioPortalKATNAL1
AceView (NCBI)KATNAL1
Genatlas (Paris)KATNAL1
WikiGenes84056
SOURCE (Princeton)KATNAL1
Genetics Home Reference (NIH)KATNAL1
Genomic and cartography
GoldenPath hg38 (UCSC)KATNAL1  -     chr13:30202630-30307054 -  13q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KATNAL1  -     13q12.3   [Description]    (hg19-Feb_2009)
EnsemblKATNAL1 - 13q12.3 [CytoView hg19]  KATNAL1 - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBIKATNAL1 [Mapview hg19]  KATNAL1 [Mapview hg38]
OMIM614764   
Gene and transcription
Genbank (Entrez)AK097423 AK291439 AK315724 AW019882 BC000612
RefSeq transcript (Entrez)NM_001014380 NM_032116
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KATNAL1
Cluster EST : UnigeneHs.243596 [ NCBI ]
CGAP (NCI)Hs.243596
Alternative Splicing GalleryENSG00000102781
Gene ExpressionKATNAL1 [ NCBI-GEO ]   KATNAL1 [ EBI - ARRAY_EXPRESS ]   KATNAL1 [ SEEK ]   KATNAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)KATNAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84056
GTEX Portal (Tissue expression)KATNAL1
Human Protein AtlasENSG00000102781-KATNAL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW62
Splice isoforms : SwissVarQ9BW62
PhosPhoSitePlusQ9BW62
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    ATPase_AAA_CS    KATNA1    Katnal1_chordates    P-loop_NTPase    Vps4_C   
Domain families : Pfam (Sanger)AAA (PF00004)    Vps4_C (PF09336)   
Domain families : Pfam (NCBI)pfam00004    pfam09336   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)KATNAL1
DMDM Disease mutations84056
Blocks (Seattle)KATNAL1
SuperfamilyQ9BW62
Human Protein Atlas [tissue]ENSG00000102781-KATNAL1 [tissue]
Peptide AtlasQ9BW62
HPRD13753
IPIIPI00789455   IPI00641010   IPI00032590   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW62
IntAct (EBI)Q9BW62
FunCoupENSG00000102781
BioGRIDKATNAL1
STRING (EMBL)KATNAL1
ZODIACKATNAL1
Ontologies - Pathways
QuickGOQ9BW62
Ontology : AmiGOprotein binding  ATP binding  nucleus  cytoplasm  microtubule  microtubule binding  microtubule-severing ATPase activity  cytoplasmic microtubule organization  identical protein binding  microtubule severing  
Ontology : EGO-EBIprotein binding  ATP binding  nucleus  cytoplasm  microtubule  microtubule binding  microtubule-severing ATPase activity  cytoplasmic microtubule organization  identical protein binding  microtubule severing  
NDEx NetworkKATNAL1
Atlas of Cancer Signalling NetworkKATNAL1
Wikipedia pathwaysKATNAL1
Orthology - Evolution
OrthoDB84056
GeneTree (enSembl)ENSG00000102781
Phylogenetic Trees/Animal Genes : TreeFamKATNAL1
HOVERGENQ9BW62
HOGENOMQ9BW62
Homologs : HomoloGeneKATNAL1
Homology/Alignments : Family Browser (UCSC)KATNAL1
Gene fusions - Rearrangements
Tumor Fusion PortalKATNAL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKATNAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KATNAL1
dbVarKATNAL1
ClinVarKATNAL1
1000_GenomesKATNAL1 
Exome Variant ServerKATNAL1
ExAC (Exome Aggregation Consortium)ENSG00000102781
GNOMAD BrowserENSG00000102781
Genetic variants : HAPMAP84056
Genomic Variants (DGV)KATNAL1 [DGVbeta]
DECIPHERKATNAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKATNAL1 
Mutations
ICGC Data PortalKATNAL1 
TCGA Data PortalKATNAL1 
Broad Tumor PortalKATNAL1
OASIS PortalKATNAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKATNAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKATNAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KATNAL1
DgiDB (Drug Gene Interaction Database)KATNAL1
DoCM (Curated mutations)KATNAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KATNAL1 (select a term)
intoGenKATNAL1
Cancer3DKATNAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614764   
Orphanet
DisGeNETKATNAL1
MedgenKATNAL1
Genetic Testing Registry KATNAL1
NextProtQ9BW62 [Medical]
TSGene84056
GENETestsKATNAL1
Target ValidationKATNAL1
Huge Navigator KATNAL1 [HugePedia]
snp3D : Map Gene to Disease84056
BioCentury BCIQKATNAL1
ClinGenKATNAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84056
Chemical/Pharm GKB GenePA134951885
Clinical trialKATNAL1
Miscellaneous
canSAR (ICR)KATNAL1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKATNAL1
EVEXKATNAL1
GoPubMedKATNAL1
iHOPKATNAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:28:04 CET 2017

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