Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KATNAL2 (katanin p60 subunit A-like 2)

Identity

Alias_nameskatanin p60 subunit A-like 2
katanin p60 subunit A like 2
katanin catalytic subunit A like 2
Alias_symbol (synonym)MGC33211
DKFZP667C165
Other alias-
HGNC (Hugo) KATNAL2
LocusID (NCBI) 83473
Atlas_Id 64743
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 44526787 and ends at 44628614 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMCO3 (13q34) / KATNAL2 (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KATNAL2   25387
Cards
Entrez_Gene (NCBI)KATNAL2  83473  katanin p60 subunit A-like 2
Aliases
GeneCards (Weizmann)KATNAL2
Ensembl hg19 (Hinxton)ENSG00000167216 [Gene_View]  chr18:44526787-44628614 [Contig_View]  KATNAL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167216 [Gene_View]  chr18:44526787-44628614 [Contig_View]  KATNAL2 [Vega]
ICGC DataPortalENSG00000167216
TCGA cBioPortalKATNAL2
AceView (NCBI)KATNAL2
Genatlas (Paris)KATNAL2
WikiGenes83473
SOURCE (Princeton)KATNAL2
Genetics Home Reference (NIH)KATNAL2
Genomic and cartography
GoldenPath hg19 (UCSC)KATNAL2  -     chr18:44526787-44628614 +  18q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KATNAL2  -     18q21.1   [Description]    (hg38-Dec_2013)
EnsemblKATNAL2 - 18q21.1 [CytoView hg19]  KATNAL2 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIKATNAL2 [Mapview hg19]  KATNAL2 [Mapview hg38]
OMIM614697   
Gene and transcription
Genbank (Entrez)AK309134 AL512748 BC034999 CA311572 CN303333
RefSeq transcript (Entrez)NM_031303
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)KATNAL2
Cluster EST : UnigeneHs.404137 [ NCBI ]
CGAP (NCI)Hs.404137
Alternative Splicing GalleryENSG00000167216
Gene ExpressionKATNAL2 [ NCBI-GEO ]   KATNAL2 [ EBI - ARRAY_EXPRESS ]   KATNAL2 [ SEEK ]   KATNAL2 [ MEM ]
Gene Expression Viewer (FireBrowse)KATNAL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83473
GTEX Portal (Tissue expression)KATNAL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYT4
Splice isoforms : SwissVarQ8IYT4
PhosPhoSitePlusQ8IYT4
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    Katanin_p60_AL2    LisH    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)    LisH (PF08513)   
Domain families : Pfam (NCBI)pfam00004    pfam08513   
Domain families : Smart (EMBL)AAA (SM00382)  LisH (SM00667)  
Conserved Domain (NCBI)KATNAL2
DMDM Disease mutations83473
Blocks (Seattle)KATNAL2
SuperfamilyQ8IYT4
Human Protein AtlasENSG00000167216
Peptide AtlasQ8IYT4
HPRD13754
IPIIPI00894474   IPI00239789   IPI01015944   IPI00903221   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYT4
IntAct (EBI)Q8IYT4
FunCoupENSG00000167216
BioGRIDKATNAL2
STRING (EMBL)KATNAL2
ZODIACKATNAL2
Ontologies - Pathways
QuickGOQ8IYT4
Ontology : AmiGOATP binding  cytoplasm  microtubule  microtubule binding  metabolic process  metabolic process  microtubule-severing ATPase activity  cytoplasmic microtubule organization  microtubule severing  
Ontology : EGO-EBIATP binding  cytoplasm  microtubule  microtubule binding  metabolic process  metabolic process  microtubule-severing ATPase activity  cytoplasmic microtubule organization  microtubule severing  
NDEx NetworkKATNAL2
Atlas of Cancer Signalling NetworkKATNAL2
Wikipedia pathwaysKATNAL2
Orthology - Evolution
OrthoDB83473
GeneTree (enSembl)ENSG00000167216
Phylogenetic Trees/Animal Genes : TreeFamKATNAL2
HOVERGENQ8IYT4
HOGENOMQ8IYT4
Homologs : HomoloGeneKATNAL2
Homology/Alignments : Family Browser (UCSC)KATNAL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKATNAL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KATNAL2
dbVarKATNAL2
ClinVarKATNAL2
1000_GenomesKATNAL2 
Exome Variant ServerKATNAL2
ExAC (Exome Aggregation Consortium)KATNAL2 (select the gene name)
Genetic variants : HAPMAP83473
Genomic Variants (DGV)KATNAL2 [DGVbeta]
DECIPHER (Syndromes)18:44526787-44628614  ENSG00000167216
CONAN: Copy Number AnalysisKATNAL2 
Mutations
ICGC Data PortalKATNAL2 
TCGA Data PortalKATNAL2 
Broad Tumor PortalKATNAL2
OASIS PortalKATNAL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKATNAL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKATNAL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KATNAL2
DgiDB (Drug Gene Interaction Database)KATNAL2
DoCM (Curated mutations)KATNAL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KATNAL2 (select a term)
intoGenKATNAL2
Cancer3DKATNAL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614697   
Orphanet
MedgenKATNAL2
Genetic Testing Registry KATNAL2
NextProtQ8IYT4 [Medical]
TSGene83473
GENETestsKATNAL2
Huge Navigator KATNAL2 [HugePedia]
snp3D : Map Gene to Disease83473
BioCentury BCIQKATNAL2
ClinGenKATNAL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83473
Chemical/Pharm GKB GenePA134921461
Clinical trialKATNAL2
Miscellaneous
canSAR (ICR)KATNAL2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKATNAL2
EVEXKATNAL2
GoPubMedKATNAL2
iHOPKATNAL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:09:17 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.