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KATNBL1 (katanin regulatory subunit B1 like 1)

Identity

Alias_namesC15orf29
chromosome 15 open reading frame 29
katanin p80 subunit B-like 1
Alias_symbol (synonym)FLJ22557
Other alias
HGNC (Hugo) KATNBL1
LocusID (NCBI) 79768
Atlas_Id 64745
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34140674 and ends at 34210096 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KATNBL1 (15q14) / TP53BP1 (15q15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KATNBL1   26199
Cards
Entrez_Gene (NCBI)KATNBL1  79768  katanin regulatory subunit B1 like 1
AliasesC15orf29
GeneCards (Weizmann)KATNBL1
Ensembl hg19 (Hinxton)ENSG00000134152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134152 [Gene_View]  chr15:34140674-34210096 [Contig_View]  KATNBL1 [Vega]
ICGC DataPortalENSG00000134152
TCGA cBioPortalKATNBL1
AceView (NCBI)KATNBL1
Genatlas (Paris)KATNBL1
WikiGenes79768
SOURCE (Princeton)KATNBL1
Genetics Home Reference (NIH)KATNBL1
Genomic and cartography
GoldenPath hg38 (UCSC)KATNBL1  -     chr15:34140674-34210096 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KATNBL1  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblKATNBL1 - 15q14 [CytoView hg19]  KATNBL1 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIKATNBL1 [Mapview hg19]  KATNBL1 [Mapview hg38]
OMIM616235   
Gene and transcription
Genbank (Entrez)AK026210 AK293021 AK293695 AK297904 AK311338
RefSeq transcript (Entrez)NM_024713
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KATNBL1
Cluster EST : UnigeneHs.633566 [ NCBI ]
CGAP (NCI)Hs.633566
Alternative Splicing GalleryENSG00000134152
Gene ExpressionKATNBL1 [ NCBI-GEO ]   KATNBL1 [ EBI - ARRAY_EXPRESS ]   KATNBL1 [ SEEK ]   KATNBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)KATNBL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79768
GTEX Portal (Tissue expression)KATNBL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H079   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H079  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H079
Splice isoforms : SwissVarQ9H079
PhosPhoSitePlusQ9H079
Domains : Interpro (EBI)Katanin_C-terminal   
Domain families : Pfam (Sanger)Katanin_con80 (PF13925)   
Domain families : Pfam (NCBI)pfam13925   
Conserved Domain (NCBI)KATNBL1
DMDM Disease mutations79768
Blocks (Seattle)KATNBL1
SuperfamilyQ9H079
Human Protein AtlasENSG00000134152
Peptide AtlasQ9H079
HPRD07995
IPIIPI00003035   IPI01010406   
Protein Interaction databases
DIP (DOE-UCLA)Q9H079
IntAct (EBI)Q9H079
FunCoupENSG00000134152
BioGRIDKATNBL1
STRING (EMBL)KATNBL1
ZODIACKATNBL1
Ontologies - Pathways
QuickGOQ9H079
Ontology : AmiGOprotein binding  nucleolus  
Ontology : EGO-EBIprotein binding  nucleolus  
NDEx NetworkKATNBL1
Atlas of Cancer Signalling NetworkKATNBL1
Wikipedia pathwaysKATNBL1
Orthology - Evolution
OrthoDB79768
GeneTree (enSembl)ENSG00000134152
Phylogenetic Trees/Animal Genes : TreeFamKATNBL1
HOVERGENQ9H079
HOGENOMQ9H079
Homologs : HomoloGeneKATNBL1
Homology/Alignments : Family Browser (UCSC)KATNBL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKATNBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KATNBL1
dbVarKATNBL1
ClinVarKATNBL1
1000_GenomesKATNBL1 
Exome Variant ServerKATNBL1
ExAC (Exome Aggregation Consortium)KATNBL1 (select the gene name)
Genetic variants : HAPMAP79768
Genomic Variants (DGV)KATNBL1 [DGVbeta]
DECIPHERKATNBL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKATNBL1 
Mutations
ICGC Data PortalKATNBL1 
TCGA Data PortalKATNBL1 
Broad Tumor PortalKATNBL1
OASIS PortalKATNBL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKATNBL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KATNBL1
DgiDB (Drug Gene Interaction Database)KATNBL1
DoCM (Curated mutations)KATNBL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KATNBL1 (select a term)
intoGenKATNBL1
Cancer3DKATNBL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616235   
Orphanet
MedgenKATNBL1
Genetic Testing Registry KATNBL1
NextProtQ9H079 [Medical]
TSGene79768
GENETestsKATNBL1
Target ValidationKATNBL1
Huge Navigator KATNBL1 [HugePedia]
snp3D : Map Gene to Disease79768
BioCentury BCIQKATNBL1
ClinGenKATNBL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79768
Chemical/Pharm GKB GenePA134985944
Clinical trialKATNBL1
Miscellaneous
canSAR (ICR)KATNBL1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKATNBL1
EVEXKATNBL1
GoPubMedKATNBL1
iHOPKATNBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:58 CEST 2017

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