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KATNBL1 (katanin regulatory subunit B1 like 1)

Identity

Alias (NCBI)C15orf29
HGNC (Hugo) KATNBL1
HGNC Alias symbFLJ22557
HGNC Previous nameC15orf29
HGNC Previous namechromosome 15 open reading frame 29
 katanin p80 subunit B-like 1
LocusID (NCBI) 79768
Atlas_Id 64745
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34140674 and ends at 34210096 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KATNBL1 (15q14) / TP53BP1 (15q15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)KATNBL1   26199
Cards
Entrez_Gene (NCBI)KATNBL1    katanin regulatory subunit B1 like 1
AliasesC15orf29
GeneCards (Weizmann)KATNBL1
Ensembl hg19 (Hinxton)ENSG00000134152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134152 [Gene_View]  ENSG00000134152 [Sequence]  chr15:34140674-34210096 [Contig_View]  KATNBL1 [Vega]
ICGC DataPortalENSG00000134152
TCGA cBioPortalKATNBL1
AceView (NCBI)KATNBL1
Genatlas (Paris)KATNBL1
SOURCE (Princeton)KATNBL1
Genetics Home Reference (NIH)KATNBL1
Genomic and cartography
GoldenPath hg38 (UCSC)KATNBL1  -     chr15:34140674-34210096 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KATNBL1  -     15q14   [Description]    (hg19-Feb_2009)
GoldenPathKATNBL1 - 15q14 [CytoView hg19]  KATNBL1 - 15q14 [CytoView hg38]
ImmunoBaseENSG00000134152
Genome Data Viewer NCBIKATNBL1 [Mapview hg19]  
OMIM616235   
Gene and transcription
Genbank (Entrez)AK026210 AK293021 AK293695 AK297904 AK311338
RefSeq transcript (Entrez)NM_024713
Consensus coding sequences : CCDS (NCBI)KATNBL1
Gene ExpressionKATNBL1 [ NCBI-GEO ]   KATNBL1 [ EBI - ARRAY_EXPRESS ]   KATNBL1 [ SEEK ]   KATNBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)KATNBL1 [ Firebrowse - Broad ]
GenevisibleExpression of KATNBL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79768
GTEX Portal (Tissue expression)KATNBL1
Human Protein AtlasENSG00000134152-KATNBL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H079   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H079  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H079
PhosPhoSitePlusQ9H079
Domains : Interpro (EBI)Katanin_C-terminal    KATNBL1   
Domain families : Pfam (Sanger)Katanin_con80 (PF13925)   
Domain families : Pfam (NCBI)pfam13925   
Conserved Domain (NCBI)KATNBL1
SuperfamilyQ9H079
AlphaFold pdb e-kbQ9H079   
Human Protein Atlas [tissue]ENSG00000134152-KATNBL1 [tissue]
HPRD07995
Protein Interaction databases
DIP (DOE-UCLA)Q9H079
IntAct (EBI)Q9H079
BioGRIDKATNBL1
STRING (EMBL)KATNBL1
ZODIACKATNBL1
Ontologies - Pathways
QuickGOQ9H079
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  nucleolus  nucleolus  cytoplasm  microtubule binding  midbody  cleavage furrow  positive regulation of cytoskeleton organization  mitotic spindle  mitotic spindle pole  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  nucleolus  nucleolus  cytoplasm  microtubule binding  midbody  cleavage furrow  positive regulation of cytoskeleton organization  mitotic spindle  mitotic spindle pole  
NDEx NetworkKATNBL1
Atlas of Cancer Signalling NetworkKATNBL1
Wikipedia pathwaysKATNBL1
Orthology - Evolution
OrthoDB79768
GeneTree (enSembl)ENSG00000134152
Phylogenetic Trees/Animal Genes : TreeFamKATNBL1
Homologs : HomoloGeneKATNBL1
Homology/Alignments : Family Browser (UCSC)KATNBL1
Gene fusions - Rearrangements
Fusion : QuiverKATNBL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKATNBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KATNBL1
dbVarKATNBL1
ClinVarKATNBL1
MonarchKATNBL1
1000_GenomesKATNBL1 
Exome Variant ServerKATNBL1
GNOMAD BrowserENSG00000134152
Varsome BrowserKATNBL1
ACMGKATNBL1 variants
VarityQ9H079
Genomic Variants (DGV)KATNBL1 [DGVbeta]
DECIPHERKATNBL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKATNBL1 
Mutations
ICGC Data PortalKATNBL1 
TCGA Data PortalKATNBL1 
Broad Tumor PortalKATNBL1
OASIS PortalKATNBL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKATNBL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKATNBL1
Mutations and Diseases : HGMDKATNBL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaKATNBL1
DgiDB (Drug Gene Interaction Database)KATNBL1
DoCM (Curated mutations)KATNBL1
CIViC (Clinical Interpretations of Variants in Cancer)KATNBL1
Cancer3DKATNBL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616235   
Orphanet
DisGeNETKATNBL1
MedgenKATNBL1
Genetic Testing Registry KATNBL1
NextProtQ9H079 [Medical]
GENETestsKATNBL1
Target ValidationKATNBL1
Huge Navigator KATNBL1 [HugePedia]
ClinGenKATNBL1
Clinical trials, drugs, therapy
MyCancerGenomeKATNBL1
Protein Interactions : CTDKATNBL1
Pharm GKB GenePA134985944
PharosQ9H079
Clinical trialKATNBL1
Miscellaneous
canSAR (ICR)KATNBL1
HarmonizomeKATNBL1
DataMed IndexKATNBL1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKATNBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:54:12 CEST 2021

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