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KBTBD11 (kelch repeat and BTB domain containing 11)

Identity

Alias_nameskelch repeat and BTB (POZ) domain containing 11
Alias_symbol (synonym)KIAA0711
KLHDC7C
Other alias
HGNC (Hugo) KBTBD11
LocusID (NCBI) 9920
Atlas_Id 64748
Location 8p23.3  [Link to chromosome band 8p23]
Location_base_pair Starts at 1973878 and ends at 2006943 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KBTBD11   29104
Cards
Entrez_Gene (NCBI)KBTBD11  9920  kelch repeat and BTB domain containing 11
AliasesKLHDC7C
GeneCards (Weizmann)KBTBD11
Ensembl hg19 (Hinxton)ENSG00000176595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176595 [Gene_View]  chr8:1973878-2006943 [Contig_View]  KBTBD11 [Vega]
ICGC DataPortalENSG00000176595
TCGA cBioPortalKBTBD11
AceView (NCBI)KBTBD11
Genatlas (Paris)KBTBD11
WikiGenes9920
SOURCE (Princeton)KBTBD11
Genetics Home Reference (NIH)KBTBD11
Genomic and cartography
GoldenPath hg38 (UCSC)KBTBD11  -     chr8:1973878-2006943 +  8p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KBTBD11  -     8p23.3   [Description]    (hg19-Feb_2009)
EnsemblKBTBD11 - 8p23.3 [CytoView hg19]  KBTBD11 - 8p23.3 [CytoView hg38]
Mapping of homologs : NCBIKBTBD11 [Mapview hg19]  KBTBD11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018254 AF009203 AY762229 BC169331 BC169332
RefSeq transcript (Entrez)NM_014867
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187576
Consensus coding sequences : CCDS (NCBI)KBTBD11
Cluster EST : UnigeneHs.5333 [ NCBI ]
CGAP (NCI)Hs.5333
Alternative Splicing GalleryENSG00000176595
Gene ExpressionKBTBD11 [ NCBI-GEO ]   KBTBD11 [ EBI - ARRAY_EXPRESS ]   KBTBD11 [ SEEK ]   KBTBD11 [ MEM ]
Gene Expression Viewer (FireBrowse)KBTBD11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9920
GTEX Portal (Tissue expression)KBTBD11
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94819   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94819  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94819
Splice isoforms : SwissVarO94819
PhosPhoSitePlusO94819
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    Kelch-typ_b-propeller    Kelch_1    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam00651    pfam01344   
Domain families : Smart (EMBL)BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)KBTBD11
DMDM Disease mutations9920
Blocks (Seattle)KBTBD11
SuperfamilyO94819
Human Protein AtlasENSG00000176595
Peptide AtlasO94819
HPRD17195
IPIIPI00015568   
Protein Interaction databases
DIP (DOE-UCLA)O94819
IntAct (EBI)O94819
FunCoupENSG00000176595
BioGRIDKBTBD11
STRING (EMBL)KBTBD11
ZODIACKBTBD11
Ontologies - Pathways
QuickGOO94819
Ontology : AmiGOubiquitin-protein transferase activity  protein ubiquitination  Cul3-RING ubiquitin ligase complex  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein ubiquitination  Cul3-RING ubiquitin ligase complex  
NDEx NetworkKBTBD11
Atlas of Cancer Signalling NetworkKBTBD11
Wikipedia pathwaysKBTBD11
Orthology - Evolution
OrthoDB9920
GeneTree (enSembl)ENSG00000176595
Phylogenetic Trees/Animal Genes : TreeFamKBTBD11
HOVERGENO94819
HOGENOMO94819
Homologs : HomoloGeneKBTBD11
Homology/Alignments : Family Browser (UCSC)KBTBD11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKBTBD11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KBTBD11
dbVarKBTBD11
ClinVarKBTBD11
1000_GenomesKBTBD11 
Exome Variant ServerKBTBD11
ExAC (Exome Aggregation Consortium)KBTBD11 (select the gene name)
Genetic variants : HAPMAP9920
Genomic Variants (DGV)KBTBD11 [DGVbeta]
DECIPHERKBTBD11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKBTBD11 
Mutations
ICGC Data PortalKBTBD11 
TCGA Data PortalKBTBD11 
Broad Tumor PortalKBTBD11
OASIS PortalKBTBD11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKBTBD11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKBTBD11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KBTBD11
DgiDB (Drug Gene Interaction Database)KBTBD11
DoCM (Curated mutations)KBTBD11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KBTBD11 (select a term)
intoGenKBTBD11
Cancer3DKBTBD11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKBTBD11
Genetic Testing Registry KBTBD11
NextProtO94819 [Medical]
TSGene9920
GENETestsKBTBD11
Target ValidationKBTBD11
Huge Navigator KBTBD11 [HugePedia]
snp3D : Map Gene to Disease9920
BioCentury BCIQKBTBD11
ClinGenKBTBD11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9920
Chemical/Pharm GKB GenePA142671642
Clinical trialKBTBD11
Miscellaneous
canSAR (ICR)KBTBD11 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKBTBD11
EVEXKBTBD11
GoPubMedKBTBD11
iHOPKBTBD11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:58 CEST 2017

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