Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KBTBD6 (kelch repeat and BTB domain containing 6)

Identity

Alias (NCBI)-
HGNC (Hugo) KBTBD6
HGNC Alias symbDKFZp547E1912
HGNC Previous namekelch repeat and BTB (POZ) domain containing 6
LocusID (NCBI) 89890
Atlas_Id 64754
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 41127573 and ends at 41132800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KBTBD6   25340
Cards
Entrez_Gene (NCBI)KBTBD6    kelch repeat and BTB domain containing 6
Aliases
GeneCards (Weizmann)KBTBD6
Ensembl hg19 (Hinxton)ENSG00000165572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165572 [Gene_View]  ENSG00000165572 [Sequence]  chr13:41127573-41132800 [Contig_View]  KBTBD6 [Vega]
ICGC DataPortalENSG00000165572
TCGA cBioPortalKBTBD6
AceView (NCBI)KBTBD6
Genatlas (Paris)KBTBD6
SOURCE (Princeton)KBTBD6
Genetics Home Reference (NIH)KBTBD6
Genomic and cartography
GoldenPath hg38 (UCSC)KBTBD6  -     chr13:41127573-41132800 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KBTBD6  -     13q14.11   [Description]    (hg19-Feb_2009)
GoldenPathKBTBD6 - 13q14.11 [CytoView hg19]  KBTBD6 - 13q14.11 [CytoView hg38]
ImmunoBaseENSG00000165572
genome Data Viewer NCBIKBTBD6 [Mapview hg19]  
OMIM617738   
Gene and transcription
Genbank (Entrez)AK023475 AK056633 AK095195 AK096608 AK299627
RefSeq transcript (Entrez)NM_152903
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KBTBD6
Alternative Splicing GalleryENSG00000165572
Gene ExpressionKBTBD6 [ NCBI-GEO ]   KBTBD6 [ EBI - ARRAY_EXPRESS ]   KBTBD6 [ SEEK ]   KBTBD6 [ MEM ]
Gene Expression Viewer (FireBrowse)KBTBD6 [ Firebrowse - Broad ]
GenevisibleExpression of KBTBD6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89890
GTEX Portal (Tissue expression)KBTBD6
Human Protein AtlasENSG00000165572-KBTBD6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V97
Splice isoforms : SwissVarQ86V97
PhosPhoSitePlusQ86V97
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB-kelch_protein    BTB/POZ_dom    Kelch-typ_b-propeller    Kelch_1    SKP1/BTB/POZ_sf   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)KBTBD6
Blocks (Seattle)KBTBD6
PDB (RSDB)4XC2   
PDB Europe4XC2   
PDB (PDBSum)4XC2   
PDB (IMB)4XC2   
Structural Biology KnowledgeBase4XC2   
SCOP (Structural Classification of Proteins)4XC2   
CATH (Classification of proteins structures)4XC2   
SuperfamilyQ86V97
Human Protein Atlas [tissue]ENSG00000165572-KBTBD6 [tissue]
Peptide AtlasQ86V97
HPRD13758
IPIIPI00332050   IPI00910405   
Protein Interaction databases
DIP (DOE-UCLA)Q86V97
IntAct (EBI)Q86V97
BioGRIDKBTBD6
STRING (EMBL)KBTBD6
ZODIACKBTBD6
Ontologies - Pathways
QuickGOQ86V97
Ontology : AmiGOmolecular_function  protein binding  cellular_component  cytosol  biological_process  post-translational protein modification  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  cytosol  biological_process  post-translational protein modification  
NDEx NetworkKBTBD6
Atlas of Cancer Signalling NetworkKBTBD6
Wikipedia pathwaysKBTBD6
Orthology - Evolution
OrthoDB89890
GeneTree (enSembl)ENSG00000165572
Phylogenetic Trees/Animal Genes : TreeFamKBTBD6
HOGENOMQ86V97
Homologs : HomoloGeneKBTBD6
Homology/Alignments : Family Browser (UCSC)KBTBD6
Gene fusions - Rearrangements
Fusion : QuiverKBTBD6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKBTBD6 [hg38]
dbVarKBTBD6
ClinVarKBTBD6
MonarchKBTBD6
1000_GenomesKBTBD6 
Exome Variant ServerKBTBD6
GNOMAD BrowserENSG00000165572
Varsome BrowserKBTBD6
Genomic Variants (DGV)KBTBD6 [DGVbeta]
DECIPHERKBTBD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKBTBD6 
Mutations
ICGC Data PortalKBTBD6 
TCGA Data PortalKBTBD6 
Broad Tumor PortalKBTBD6
OASIS PortalKBTBD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKBTBD6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKBTBD6
Mutations and Diseases : HGMDKBTBD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KBTBD6
DgiDB (Drug Gene Interaction Database)KBTBD6
DoCM (Curated mutations)KBTBD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KBTBD6 (select a term)
intoGenKBTBD6
Cancer3DKBTBD6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617738   
Orphanet
DisGeNETKBTBD6
MedgenKBTBD6
Genetic Testing Registry KBTBD6
NextProtQ86V97 [Medical]
GENETestsKBTBD6
Target ValidationKBTBD6
Huge Navigator KBTBD6 [HugePedia]
ClinGenKBTBD6
Clinical trials, drugs, therapy
MyCancerGenomeKBTBD6
Protein Interactions : CTD
Pharm GKB GenePA134955690
Clinical trialKBTBD6
Miscellaneous
canSAR (ICR)KBTBD6 (select the gene name)
HarmonizomeKBTBD6
DataMed IndexKBTBD6
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKBTBD6
EVEXKBTBD6
GoPubMedKBTBD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:58:20 CET 2020
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