Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNA10 (potassium channel, voltage gated shaker related subfamily A, member 10)

Identity

Alias_namespotassium voltage-gated channel, shaker-related subfamily, member 10
Alias_symbol (synonym)Kv1.8
Other aliasKcn1
HGNC (Hugo) KCNA10
LocusID (NCBI) 3744
Atlas_Id 64757
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 111059839 and ends at 111061797 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNA10   6219
Cards
Entrez_Gene (NCBI)KCNA10  3744  potassium channel, voltage gated shaker related subfamily A, member 10
AliasesKcn1; Kv1.8
GeneCards (Weizmann)KCNA10
Ensembl hg19 (Hinxton)ENSG00000143105 [Gene_View]  chr1:111059839-111061797 [Contig_View]  KCNA10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143105 [Gene_View]  chr1:111059839-111061797 [Contig_View]  KCNA10 [Vega]
ICGC DataPortalENSG00000143105
TCGA cBioPortalKCNA10
AceView (NCBI)KCNA10
Genatlas (Paris)KCNA10
WikiGenes3744
SOURCE (Princeton)KCNA10
Genetics Home Reference (NIH)KCNA10
Genomic and cartography
GoldenPath hg19 (UCSC)KCNA10  -     chr1:111059839-111061797 -  1p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNA10  -     1p13.3   [Description]    (hg38-Dec_2013)
EnsemblKCNA10 - 1p13.3 [CytoView hg19]  KCNA10 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIKCNA10 [Mapview hg19]  KCNA10 [Mapview hg38]
OMIM602420   
Gene and transcription
Genbank (Entrez)BC074990 CA309199
RefSeq transcript (Entrez)NM_005549
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)KCNA10
Cluster EST : UnigeneHs.622910 [ NCBI ]
CGAP (NCI)Hs.622910
Alternative Splicing GalleryENSG00000143105
Gene ExpressionKCNA10 [ NCBI-GEO ]   KCNA10 [ EBI - ARRAY_EXPRESS ]   KCNA10 [ SEEK ]   KCNA10 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3744
GTEX Portal (Tissue expression)KCNA10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16322   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16322  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16322
Splice isoforms : SwissVarQ16322
PhosPhoSitePlusQ16322
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    Channel_four-helix_dom    Ion_trans_dom    K_chnl    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv1    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNA10
DMDM Disease mutations3744
Blocks (Seattle)KCNA10
SuperfamilyQ16322
Human Protein AtlasENSG00000143105
Peptide AtlasQ16322
HPRD03882
IPIIPI00023658   
Protein Interaction databases
DIP (DOE-UCLA)Q16322
IntAct (EBI)Q16322
FunCoupENSG00000143105
BioGRIDKCNA10
STRING (EMBL)KCNA10
ZODIACKCNA10
Ontologies - Pathways
QuickGOQ16322
Ontology : AmiGOintracellular cyclic nucleotide activated cation channel activity  delayed rectifier potassium channel activity  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
Ontology : EGO-EBIintracellular cyclic nucleotide activated cation channel activity  delayed rectifier potassium channel activity  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
NDEx NetworkKCNA10
Atlas of Cancer Signalling NetworkKCNA10
Wikipedia pathwaysKCNA10
Orthology - Evolution
OrthoDB3744
GeneTree (enSembl)ENSG00000143105
Phylogenetic Trees/Animal Genes : TreeFamKCNA10
HOVERGENQ16322
HOGENOMQ16322
Homologs : HomoloGeneKCNA10
Homology/Alignments : Family Browser (UCSC)KCNA10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNA10
dbVarKCNA10
ClinVarKCNA10
1000_GenomesKCNA10 
Exome Variant ServerKCNA10
ExAC (Exome Aggregation Consortium)KCNA10 (select the gene name)
Genetic variants : HAPMAP3744
Genomic Variants (DGV)KCNA10 [DGVbeta]
DECIPHER (Syndromes)1:111059839-111061797  ENSG00000143105
CONAN: Copy Number AnalysisKCNA10 
Mutations
ICGC Data PortalKCNA10 
TCGA Data PortalKCNA10 
Broad Tumor PortalKCNA10
OASIS PortalKCNA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNA10
DgiDB (Drug Gene Interaction Database)KCNA10
DoCM (Curated mutations)KCNA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNA10 (select a term)
intoGenKCNA10
Cancer3DKCNA10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602420   
Orphanet
MedgenKCNA10
Genetic Testing Registry KCNA10
NextProtQ16322 [Medical]
TSGene3744
GENETestsKCNA10
Huge Navigator KCNA10 [HugePedia]
snp3D : Map Gene to Disease3744
BioCentury BCIQKCNA10
ClinGenKCNA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3744
Chemical/Pharm GKB GenePA30020
Clinical trialKCNA10
Miscellaneous
canSAR (ICR)KCNA10 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNA10
EVEXKCNA10
GoPubMedKCNA10
iHOPKCNA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:20 CET 2017

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