Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCNA7 (potassium voltage-gated channel subfamily A member 7)

Identity

Alias_namespotassium voltage-gated channel, shaker-related subfamily, member 7
Alias_symbol (synonym)Kv1.7
HAK6
Other aliasKV1.7
HGNC (Hugo) KCNA7
LocusID (NCBI) 3743
Atlas_Id 64758
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49067418 and ends at 49072941 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNA7   6226
Cards
Entrez_Gene (NCBI)KCNA7  3743  potassium voltage-gated channel subfamily A member 7
AliasesHAK6; KV1.7
GeneCards (Weizmann)KCNA7
Ensembl hg19 (Hinxton)ENSG00000104848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104848 [Gene_View]  chr19:49067418-49072941 [Contig_View]  KCNA7 [Vega]
ICGC DataPortalENSG00000104848
TCGA cBioPortalKCNA7
AceView (NCBI)KCNA7
Genatlas (Paris)KCNA7
WikiGenes3743
SOURCE (Princeton)KCNA7
Genetics Home Reference (NIH)KCNA7
Genomic and cartography
GoldenPath hg38 (UCSC)KCNA7  -     chr19:49067418-49072941 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNA7  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblKCNA7 - 19q13.33 [CytoView hg19]  KCNA7 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIKCNA7 [Mapview hg19]  KCNA7 [Mapview hg38]
OMIM176268   
Gene and transcription
Genbank (Entrez)AF315818 AJ310479 AY779768 BC140906
RefSeq transcript (Entrez)NM_031886
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNA7
Cluster EST : UnigeneHs.306973 [ NCBI ]
CGAP (NCI)Hs.306973
Alternative Splicing GalleryENSG00000104848
Gene ExpressionKCNA7 [ NCBI-GEO ]   KCNA7 [ EBI - ARRAY_EXPRESS ]   KCNA7 [ SEEK ]   KCNA7 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3743
GTEX Portal (Tissue expression)KCNA7
Human Protein AtlasENSG00000104848-KCNA7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RP8
Splice isoforms : SwissVarQ96RP8
PhosPhoSitePlusQ96RP8
Domains : Interpro (EBI)BTB/POZ_dom    Channel_four-helix_dom    Ion_trans_dom    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv1    SKP1/BTB/POZ    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNA7
DMDM Disease mutations3743
Blocks (Seattle)KCNA7
SuperfamilyQ96RP8
Human Protein Atlas [tissue]ENSG00000104848-KCNA7 [tissue]
Peptide AtlasQ96RP8
HPRD01445
IPIIPI00170531   
Protein Interaction databases
DIP (DOE-UCLA)Q96RP8
IntAct (EBI)Q96RP8
FunCoupENSG00000104848
BioGRIDKCNA7
STRING (EMBL)KCNA7
ZODIACKCNA7
Ontologies - Pathways
QuickGOQ96RP8
Ontology : AmiGOvoltage-gated potassium channel activity  plasma membrane  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated potassium channel activity  plasma membrane  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
NDEx NetworkKCNA7
Atlas of Cancer Signalling NetworkKCNA7
Wikipedia pathwaysKCNA7
Orthology - Evolution
OrthoDB3743
GeneTree (enSembl)ENSG00000104848
Phylogenetic Trees/Animal Genes : TreeFamKCNA7
HOVERGENQ96RP8
HOGENOMQ96RP8
Homologs : HomoloGeneKCNA7
Homology/Alignments : Family Browser (UCSC)KCNA7
Gene fusions - Rearrangements
Tumor Fusion PortalKCNA7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNA7
dbVarKCNA7
ClinVarKCNA7
1000_GenomesKCNA7 
Exome Variant ServerKCNA7
ExAC (Exome Aggregation Consortium)ENSG00000104848
GNOMAD BrowserENSG00000104848
Genetic variants : HAPMAP3743
Genomic Variants (DGV)KCNA7 [DGVbeta]
DECIPHERKCNA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNA7 
Mutations
ICGC Data PortalKCNA7 
TCGA Data PortalKCNA7 
Broad Tumor PortalKCNA7
OASIS PortalKCNA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNA7
DgiDB (Drug Gene Interaction Database)KCNA7
DoCM (Curated mutations)KCNA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNA7 (select a term)
intoGenKCNA7
Cancer3DKCNA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176268   
Orphanet
DisGeNETKCNA7
MedgenKCNA7
Genetic Testing Registry KCNA7
NextProtQ96RP8 [Medical]
TSGene3743
GENETestsKCNA7
Target ValidationKCNA7
Huge Navigator KCNA7 [HugePedia]
snp3D : Map Gene to Disease3743
BioCentury BCIQKCNA7
ClinGenKCNA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3743
Chemical/Pharm GKB GenePA30023
Clinical trialKCNA7
Miscellaneous
canSAR (ICR)KCNA7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNA7
EVEXKCNA7
GoPubMedKCNA7
iHOPKCNA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:45 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.