Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNAB3 (potassium voltage-gated channel subfamily A regulatory beta subunit 3)

Identity

Alias_namespotassium voltage-gated channel, shaker-related subfamily, beta member 3
potassium channel, voltage gated subfamily A regulatory beta subunit 3
Alias_symbol (synonym)AKR6A9
KCNA3B
Other aliasKCNA3.1B
KV-BETA-3
HGNC (Hugo) KCNAB3
LocusID (NCBI) 9196
Atlas_Id 64763
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7921859 and ends at 7929435 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNAB3   6230
Cards
Entrez_Gene (NCBI)KCNAB3  9196  potassium voltage-gated channel subfamily A regulatory beta subunit 3
AliasesAKR6A9; KCNA3.1B; KCNA3B; KV-BETA-3
GeneCards (Weizmann)KCNAB3
Ensembl hg19 (Hinxton)ENSG00000170049 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170049 [Gene_View]  chr17:7921859-7929435 [Contig_View]  KCNAB3 [Vega]
ICGC DataPortalENSG00000170049
TCGA cBioPortalKCNAB3
AceView (NCBI)KCNAB3
Genatlas (Paris)KCNAB3
WikiGenes9196
SOURCE (Princeton)KCNAB3
Genetics Home Reference (NIH)KCNAB3
Genomic and cartography
GoldenPath hg38 (UCSC)KCNAB3  -     chr17:7921859-7929435 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNAB3  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblKCNAB3 - 17p13.1 [CytoView hg19]  KCNAB3 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIKCNAB3 [Mapview hg19]  KCNAB3 [Mapview hg38]
OMIM604111   
Gene and transcription
Genbank (Entrez)AA716741 AF016411 AI090408 AK309378 AK309807
RefSeq transcript (Entrez)NM_004732
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNAB3
Cluster EST : UnigeneHs.435074 [ NCBI ]
CGAP (NCI)Hs.435074
Alternative Splicing GalleryENSG00000170049
Gene ExpressionKCNAB3 [ NCBI-GEO ]   KCNAB3 [ EBI - ARRAY_EXPRESS ]   KCNAB3 [ SEEK ]   KCNAB3 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNAB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9196
GTEX Portal (Tissue expression)KCNAB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43448   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43448  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43448
Splice isoforms : SwissVarO43448
PhosPhoSitePlusO43448
Domains : Interpro (EBI)K_chnl_volt-dep_bsu_KCNAB    K_chnl_volt-dep_bsu_KCNAB-rel    K_chnl_volt-dep_bsu_KCNAB3    NADP_OxRdtase_dom   
Domain families : Pfam (Sanger)Aldo_ket_red (PF00248)   
Domain families : Pfam (NCBI)pfam00248   
Conserved Domain (NCBI)KCNAB3
DMDM Disease mutations9196
Blocks (Seattle)KCNAB3
SuperfamilyO43448
Human Protein AtlasENSG00000170049
Peptide AtlasO43448
HPRD04983
IPIIPI00006204   
Protein Interaction databases
DIP (DOE-UCLA)O43448
IntAct (EBI)O43448
FunCoupENSG00000170049
BioGRIDKCNAB3
STRING (EMBL)KCNAB3
ZODIACKCNAB3
Ontologies - Pathways
QuickGOO43448
Ontology : AmiGOvoltage-gated potassium channel activity  cytoplasm  plasma membrane  potassium ion transport  potassium channel regulator activity  integral component of membrane  regulation of ion transmembrane transport  regulation of molecular function  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated potassium channel activity  cytoplasm  plasma membrane  potassium ion transport  potassium channel regulator activity  integral component of membrane  regulation of ion transmembrane transport  regulation of molecular function  potassium ion transmembrane transport  
NDEx NetworkKCNAB3
Atlas of Cancer Signalling NetworkKCNAB3
Wikipedia pathwaysKCNAB3
Orthology - Evolution
OrthoDB9196
GeneTree (enSembl)ENSG00000170049
Phylogenetic Trees/Animal Genes : TreeFamKCNAB3
HOVERGENO43448
HOGENOMO43448
Homologs : HomoloGeneKCNAB3
Homology/Alignments : Family Browser (UCSC)KCNAB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNAB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNAB3
dbVarKCNAB3
ClinVarKCNAB3
1000_GenomesKCNAB3 
Exome Variant ServerKCNAB3
ExAC (Exome Aggregation Consortium)KCNAB3 (select the gene name)
Genetic variants : HAPMAP9196
Genomic Variants (DGV)KCNAB3 [DGVbeta]
DECIPHERKCNAB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNAB3 
Mutations
ICGC Data PortalKCNAB3 
TCGA Data PortalKCNAB3 
Broad Tumor PortalKCNAB3
OASIS PortalKCNAB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNAB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNAB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNAB3
DgiDB (Drug Gene Interaction Database)KCNAB3
DoCM (Curated mutations)KCNAB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNAB3 (select a term)
intoGenKCNAB3
Cancer3DKCNAB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604111   
Orphanet
MedgenKCNAB3
Genetic Testing Registry KCNAB3
NextProtO43448 [Medical]
TSGene9196
GENETestsKCNAB3
Target ValidationKCNAB3
Huge Navigator KCNAB3 [HugePedia]
snp3D : Map Gene to Disease9196
BioCentury BCIQKCNAB3
ClinGenKCNAB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9196
Chemical/Pharm GKB GenePA30024
Clinical trialKCNAB3
Miscellaneous
canSAR (ICR)KCNAB3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNAB3
EVEXKCNAB3
GoPubMedKCNAB3
iHOPKCNAB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:02 CEST 2017

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