Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCND1 (potassium voltage-gated channel subfamily D member 1)

Identity

Alias_namespotassium voltage-gated channel, Shal-related subfamily, member 1
potassium channel, voltage gated Shal related subfamily D, member 1
Alias_symbol (synonym)Kv4.1
Other aliasKV4.1
HGNC (Hugo) KCND1
LocusID (NCBI) 3750
Atlas_Id 50971
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48961378 and ends at 48971844 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCND1   6237
Cards
Entrez_Gene (NCBI)KCND1  3750  potassium voltage-gated channel subfamily D member 1
AliasesKV4.1
GeneCards (Weizmann)KCND1
Ensembl hg19 (Hinxton)ENSG00000102057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102057 [Gene_View]  chrX:48961378-48971844 [Contig_View]  KCND1 [Vega]
ICGC DataPortalENSG00000102057
TCGA cBioPortalKCND1
AceView (NCBI)KCND1
Genatlas (Paris)KCND1
WikiGenes3750
SOURCE (Princeton)KCND1
Genetics Home Reference (NIH)KCND1
Genomic and cartography
GoldenPath hg38 (UCSC)KCND1  -     chrX:48961378-48971844 -  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCND1  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblKCND1 - Xp11.23 [CytoView hg19]  KCND1 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIKCND1 [Mapview hg19]  KCND1 [Mapview hg38]
OMIM300281   
Gene and transcription
Genbank (Entrez)AB021865 AF166003 AJ005898 AK094431 AK315092
RefSeq transcript (Entrez)NM_004979
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCND1
Cluster EST : UnigeneHs.55276 [ NCBI ]
CGAP (NCI)Hs.55276
Alternative Splicing GalleryENSG00000102057
Gene ExpressionKCND1 [ NCBI-GEO ]   KCND1 [ EBI - ARRAY_EXPRESS ]   KCND1 [ SEEK ]   KCND1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3750
GTEX Portal (Tissue expression)KCND1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSA2
Splice isoforms : SwissVarQ9NSA2
PhosPhoSitePlusQ9NSA2
Domains : Interpro (EBI)BTB/POZ_dom    Channel_four-helix_dom    Ion_trans_dom    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv4    K_chnl_volt-dep_Kv4.1    K_chnl_volt-dep_Kv4_C    Shal-type_N    SKP1/BTB/POZ    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    DUF3399 (PF11879)    Ion_trans (PF00520)    Shal-type (PF11601)   
Domain families : Pfam (NCBI)pfam02214    pfam11879    pfam00520    pfam11601   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCND1
DMDM Disease mutations3750
Blocks (Seattle)KCND1
SuperfamilyQ9NSA2
Human Protein AtlasENSG00000102057
Peptide AtlasQ9NSA2
HPRD02233
IPIIPI00007507   IPI00642307   IPI00643773   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSA2
IntAct (EBI)Q9NSA2
FunCoupENSG00000102057
BioGRIDKCND1
STRING (EMBL)KCND1
ZODIACKCND1
Ontologies - Pathways
QuickGOQ9NSA2
Ontology : AmiGOA-type (transient outward) potassium channel activity  cellular_component  plasma membrane  voltage-gated potassium channel complex  integral component of membrane  dendrite  regulation of ion transmembrane transport  neuronal cell body  metal ion binding  protein homooligomerization  cardiac conduction  potassium ion transmembrane transport  
Ontology : EGO-EBIA-type (transient outward) potassium channel activity  cellular_component  plasma membrane  voltage-gated potassium channel complex  integral component of membrane  dendrite  regulation of ion transmembrane transport  neuronal cell body  metal ion binding  protein homooligomerization  cardiac conduction  potassium ion transmembrane transport  
NDEx NetworkKCND1
Atlas of Cancer Signalling NetworkKCND1
Wikipedia pathwaysKCND1
Orthology - Evolution
OrthoDB3750
GeneTree (enSembl)ENSG00000102057
Phylogenetic Trees/Animal Genes : TreeFamKCND1
HOVERGENQ9NSA2
HOGENOMQ9NSA2
Homologs : HomoloGeneKCND1
Homology/Alignments : Family Browser (UCSC)KCND1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCND1
dbVarKCND1
ClinVarKCND1
1000_GenomesKCND1 
Exome Variant ServerKCND1
ExAC (Exome Aggregation Consortium)KCND1 (select the gene name)
Genetic variants : HAPMAP3750
Genomic Variants (DGV)KCND1 [DGVbeta]
DECIPHERKCND1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCND1 
Mutations
ICGC Data PortalKCND1 
TCGA Data PortalKCND1 
Broad Tumor PortalKCND1
OASIS PortalKCND1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCND1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCND1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch KCND1
DgiDB (Drug Gene Interaction Database)KCND1
DoCM (Curated mutations)KCND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCND1 (select a term)
intoGenKCND1
Cancer3DKCND1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300281   
Orphanet
MedgenKCND1
Genetic Testing Registry KCND1
NextProtQ9NSA2 [Medical]
TSGene3750
GENETestsKCND1
Target ValidationKCND1
Huge Navigator KCND1 [HugePedia]
snp3D : Map Gene to Disease3750
BioCentury BCIQKCND1
ClinGenKCND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3750
Chemical/Pharm GKB GenePA30029
Clinical trialKCND1
Miscellaneous
canSAR (ICR)KCND1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCND1
EVEXKCND1
GoPubMedKCND1
iHOPKCND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:39:12 CEST 2017

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