Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNE1B (potassium voltage-gated channel subfamily E regulatory subunit 1B)

Identity

Other alias-
HGNC (Hugo) KCNE1B
LocusID (NCBI) 102723475
Atlas_Id 78766
Location 21p11.2  [Link to chromosome band 21p11]
Location_base_pair Starts at 7816677 and ends at 7829632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNE1B   52280
Cards
Entrez_Gene (NCBI)KCNE1B  102723475  potassium voltage-gated channel subfamily E regulatory subunit 1B
Aliases
GeneCards (Weizmann)KCNE1B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:7816677-7829632 [Contig_View]  KCNE1B [Vega]
TCGA cBioPortalKCNE1B
AceView (NCBI)KCNE1B
Genatlas (Paris)KCNE1B
WikiGenes102723475
SOURCE (Princeton)KCNE1B
Genetics Home Reference (NIH)KCNE1B
Genomic and cartography
GoldenPath hg38 (UCSC)KCNE1B  -     chr21:7816677-7829632 -  21p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNE1B  -     21p11.2   [Description]    (hg19-Feb_2009)
EnsemblKCNE1B - 21p11.2 [CytoView hg19]  KCNE1B - 21p11.2 [CytoView hg38]
Mapping of homologs : NCBIKCNE1B [Mapview hg19]  KCNE1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001330065
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNE1B
Gene ExpressionKCNE1B [ NCBI-GEO ]   KCNE1B [ EBI - ARRAY_EXPRESS ]   KCNE1B [ SEEK ]   KCNE1B [ MEM ]
Gene Expression Viewer (FireBrowse)KCNE1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102723475
GTEX Portal (Tissue expression)KCNE1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087WTH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087WTH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087WTH5
Splice isoforms : SwissVarA0A087WTH5
PhosPhoSitePlusA0A087WTH5
Domains : Interpro (EBI)K_chnl_KCNE    K_chnl_volt-dep_bsu_KCNE1   
Domain families : Pfam (Sanger)ISK_Channel (PF02060)   
Domain families : Pfam (NCBI)pfam02060   
Conserved Domain (NCBI)KCNE1B
DMDM Disease mutations102723475
Blocks (Seattle)KCNE1B
SuperfamilyA0A087WTH5
Peptide AtlasA0A087WTH5
Protein Interaction databases
DIP (DOE-UCLA)A0A087WTH5
IntAct (EBI)A0A087WTH5
BioGRIDKCNE1B
STRING (EMBL)KCNE1B
ZODIACKCNE1B
Ontologies - Pathways
QuickGOA0A087WTH5
Ontology : AmiGOvoltage-gated potassium channel activity  integral component of membrane  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated potassium channel activity  integral component of membrane  potassium ion transmembrane transport  
NDEx NetworkKCNE1B
Atlas of Cancer Signalling NetworkKCNE1B
Wikipedia pathwaysKCNE1B
Orthology - Evolution
OrthoDB102723475
Phylogenetic Trees/Animal Genes : TreeFamKCNE1B
HOVERGENA0A087WTH5
HOGENOMA0A087WTH5
Homologs : HomoloGeneKCNE1B
Homology/Alignments : Family Browser (UCSC)KCNE1B
Gene fusions - Rearrangements
Fusion: Tumor Portal KCNE1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNE1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNE1B
dbVarKCNE1B
ClinVarKCNE1B
1000_GenomesKCNE1B 
Exome Variant ServerKCNE1B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP102723475
Genomic Variants (DGV)KCNE1B [DGVbeta]
DECIPHERKCNE1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNE1B 
Mutations
ICGC Data PortalKCNE1B 
TCGA Data PortalKCNE1B 
Broad Tumor PortalKCNE1B
OASIS PortalKCNE1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKCNE1B
BioMutasearch KCNE1B
DgiDB (Drug Gene Interaction Database)KCNE1B
DoCM (Curated mutations)KCNE1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNE1B (select a term)
intoGenKCNE1B
Cancer3DKCNE1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKCNE1B
Genetic Testing Registry KCNE1B
NextProtA0A087WTH5 [Medical]
TSGene102723475
GENETestsKCNE1B
Target ValidationKCNE1B
Huge Navigator KCNE1B [HugePedia]
snp3D : Map Gene to Disease102723475
BioCentury BCIQKCNE1B
ClinGenKCNE1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723475
Clinical trialKCNE1B
Miscellaneous
canSAR (ICR)KCNE1B (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNE1B
EVEXKCNE1B
GoPubMedKCNE1B
iHOPKCNE1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:05 CET 2017

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