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KCNF1 (potassium channel, voltage gated modifier subfamily F, member 1)

Identity

Alias_namesKCNF
potassium voltage-gated channel, subfamily F, member 1
potassium channel, voltage gated subfamily F, member 1
Alias_symbol (synonym)Kv5.1
kH1
IK8
Other aliasKV5.1
HGNC (Hugo) KCNF1
LocusID (NCBI) 3754
Atlas_Id 64776
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 11052063 and ends at 11054351 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNF1   6246
Cards
Entrez_Gene (NCBI)KCNF1  3754  potassium channel, voltage gated modifier subfamily F, member 1
AliasesIK8; KCNF; KV5.1; kH1
GeneCards (Weizmann)KCNF1
Ensembl hg19 (Hinxton)ENSG00000162975 [Gene_View]  chr2:11052063-11054351 [Contig_View]  KCNF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162975 [Gene_View]  chr2:11052063-11054351 [Contig_View]  KCNF1 [Vega]
ICGC DataPortalENSG00000162975
TCGA cBioPortalKCNF1
AceView (NCBI)KCNF1
Genatlas (Paris)KCNF1
WikiGenes3754
SOURCE (Princeton)KCNF1
Genetics Home Reference (NIH)KCNF1
Genomic and cartography
GoldenPath hg19 (UCSC)KCNF1  -     chr2:11052063-11054351 +  2p25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNF1  -     2p25.1   [Description]    (hg38-Dec_2013)
EnsemblKCNF1 - 2p25.1 [CytoView hg19]  KCNF1 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBIKCNF1 [Mapview hg19]  KCNF1 [Mapview hg38]
OMIM603787   
Gene and transcription
Genbank (Entrez)AF029780 AF033382 BC026110 EU176285
RefSeq transcript (Entrez)NM_002236
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005334 NW_004929298
Consensus coding sequences : CCDS (NCBI)KCNF1
Cluster EST : UnigeneHs.23735 [ NCBI ]
CGAP (NCI)Hs.23735
Alternative Splicing GalleryENSG00000162975
Gene ExpressionKCNF1 [ NCBI-GEO ]   KCNF1 [ EBI - ARRAY_EXPRESS ]   KCNF1 [ SEEK ]   KCNF1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3754
GTEX Portal (Tissue expression)KCNF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3M0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3M0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3M0
Splice isoforms : SwissVarQ9H3M0
PhosPhoSitePlusQ9H3M0
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    Channel_four-helix_dom    Ion_trans_dom    K_chnl    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv9    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNF1
DMDM Disease mutations3754
Blocks (Seattle)KCNF1
SuperfamilyQ9H3M0
Human Protein AtlasENSG00000162975
Peptide AtlasQ9H3M0
HPRD04808
IPIIPI00100431   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3M0
IntAct (EBI)Q9H3M0
FunCoupENSG00000162975
BioGRIDKCNF1
STRING (EMBL)KCNF1
ZODIACKCNF1
Ontologies - Pathways
QuickGOQ9H3M0
Ontology : AmiGOdelayed rectifier potassium channel activity  potassium channel activity  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
Ontology : EGO-EBIdelayed rectifier potassium channel activity  potassium channel activity  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
NDEx NetworkKCNF1
Atlas of Cancer Signalling NetworkKCNF1
Wikipedia pathwaysKCNF1
Orthology - Evolution
OrthoDB3754
GeneTree (enSembl)ENSG00000162975
Phylogenetic Trees/Animal Genes : TreeFamKCNF1
HOVERGENQ9H3M0
HOGENOMQ9H3M0
Homologs : HomoloGeneKCNF1
Homology/Alignments : Family Browser (UCSC)KCNF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNF1
dbVarKCNF1
ClinVarKCNF1
1000_GenomesKCNF1 
Exome Variant ServerKCNF1
ExAC (Exome Aggregation Consortium)KCNF1 (select the gene name)
Genetic variants : HAPMAP3754
Genomic Variants (DGV)KCNF1 [DGVbeta]
DECIPHER (Syndromes)2:11052063-11054351  ENSG00000162975
CONAN: Copy Number AnalysisKCNF1 
Mutations
ICGC Data PortalKCNF1 
TCGA Data PortalKCNF1 
Broad Tumor PortalKCNF1
OASIS PortalKCNF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNF1
DgiDB (Drug Gene Interaction Database)KCNF1
DoCM (Curated mutations)KCNF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNF1 (select a term)
intoGenKCNF1
Cancer3DKCNF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603787   
Orphanet
MedgenKCNF1
Genetic Testing Registry KCNF1
NextProtQ9H3M0 [Medical]
TSGene3754
GENETestsKCNF1
Huge Navigator KCNF1 [HugePedia]
snp3D : Map Gene to Disease3754
BioCentury BCIQKCNF1
ClinGenKCNF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3754
Chemical/Pharm GKB GenePA30033
Clinical trialKCNF1
Miscellaneous
canSAR (ICR)KCNF1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNF1
EVEXKCNF1
GoPubMedKCNF1
iHOPKCNF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:24 CET 2017

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