Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNG1 (potassium channel, voltage gated modifier subfamily G, member 1)

Identity

Alias_namesKCNG
potassium voltage-gated channel, subfamily G, member 1
Alias_symbol (synonym)Kv6.1
kH2
K13
Other aliasKV6.1
HGNC (Hugo) KCNG1
LocusID (NCBI) 3755
Atlas_Id 64777
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49620193 and ends at 49639675 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADNP (20q13.13) / KCNG1 (20q13.13)CPT1A (11q13.3) / KCNG1 (20q13.13)KCNG1 (20q13.13) / PRNP (20p13)
CPT1A KCNG1ADNP KCNG1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNG1   6248
Cards
Entrez_Gene (NCBI)KCNG1  3755  potassium channel, voltage gated modifier subfamily G, member 1
AliasesK13; KCNG; KV6.1; kH2
GeneCards (Weizmann)KCNG1
Ensembl hg19 (Hinxton)ENSG00000026559 [Gene_View]  chr20:49620193-49639675 [Contig_View]  KCNG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000026559 [Gene_View]  chr20:49620193-49639675 [Contig_View]  KCNG1 [Vega]
ICGC DataPortalENSG00000026559
TCGA cBioPortalKCNG1
AceView (NCBI)KCNG1
Genatlas (Paris)KCNG1
WikiGenes3755
SOURCE (Princeton)KCNG1
Genetics Home Reference (NIH)KCNG1
Genomic and cartography
GoldenPath hg19 (UCSC)KCNG1  -     chr20:49620193-49639675 -  20q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNG1  -     20q13.13   [Description]    (hg38-Dec_2013)
EnsemblKCNG1 - 20q13.13 [CytoView hg19]  KCNG1 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBIKCNG1 [Mapview hg19]  KCNG1 [Mapview hg38]
OMIM603788   
Gene and transcription
Genbank (Entrez)AF033383 AK290689 AW162513 BC006367 BC046629
RefSeq transcript (Entrez)NM_002237 NM_172318
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)KCNG1
Cluster EST : UnigeneHs.735151 [ NCBI ]
CGAP (NCI)Hs.735151
Alternative Splicing GalleryENSG00000026559
Gene ExpressionKCNG1 [ NCBI-GEO ]   KCNG1 [ EBI - ARRAY_EXPRESS ]   KCNG1 [ SEEK ]   KCNG1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3755
GTEX Portal (Tissue expression)KCNG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIX4
Splice isoforms : SwissVarQ9UIX4
PhosPhoSitePlusQ9UIX4
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    Channel_four-helix_dom    Ion_trans_dom    K_chnl    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv6    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNG1
DMDM Disease mutations3755
Blocks (Seattle)KCNG1
SuperfamilyQ9UIX4
Human Protein AtlasENSG00000026559
Peptide AtlasQ9UIX4
HPRD04809
IPIIPI00032434   IPI00220799   IPI00790282   IPI00640736   IPI00792627   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIX4
IntAct (EBI)Q9UIX4
FunCoupENSG00000026559
BioGRIDKCNG1
STRING (EMBL)KCNG1
ZODIACKCNG1
Ontologies - Pathways
QuickGOQ9UIX4
Ontology : AmiGOdelayed rectifier potassium channel activity  delayed rectifier potassium channel activity  delayed rectifier potassium channel activity  potassium channel activity  plasma membrane  plasma membrane  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  intracellular membrane-bounded organelle  protein homooligomerization  potassium ion transmembrane transport  potassium ion transmembrane transport  potassium ion transmembrane transport  
Ontology : EGO-EBIdelayed rectifier potassium channel activity  delayed rectifier potassium channel activity  delayed rectifier potassium channel activity  potassium channel activity  plasma membrane  plasma membrane  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  intracellular membrane-bounded organelle  protein homooligomerization  potassium ion transmembrane transport  potassium ion transmembrane transport  potassium ion transmembrane transport  
NDEx NetworkKCNG1
Atlas of Cancer Signalling NetworkKCNG1
Wikipedia pathwaysKCNG1
Orthology - Evolution
OrthoDB3755
GeneTree (enSembl)ENSG00000026559
Phylogenetic Trees/Animal Genes : TreeFamKCNG1
HOVERGENQ9UIX4
HOGENOMQ9UIX4
Homologs : HomoloGeneKCNG1
Homology/Alignments : Family Browser (UCSC)KCNG1
Gene fusions - Rearrangements
Fusion: TCGACPT1A KCNG1
Fusion: TCGAADNP KCNG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNG1
dbVarKCNG1
ClinVarKCNG1
1000_GenomesKCNG1 
Exome Variant ServerKCNG1
ExAC (Exome Aggregation Consortium)KCNG1 (select the gene name)
Genetic variants : HAPMAP3755
Genomic Variants (DGV)KCNG1 [DGVbeta]
DECIPHER (Syndromes)20:49620193-49639675  ENSG00000026559
CONAN: Copy Number AnalysisKCNG1 
Mutations
ICGC Data PortalKCNG1 
TCGA Data PortalKCNG1 
Broad Tumor PortalKCNG1
OASIS PortalKCNG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNG1
DgiDB (Drug Gene Interaction Database)KCNG1
DoCM (Curated mutations)KCNG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNG1 (select a term)
intoGenKCNG1
Cancer3DKCNG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603788   
Orphanet
MedgenKCNG1
Genetic Testing Registry KCNG1
NextProtQ9UIX4 [Medical]
TSGene3755
GENETestsKCNG1
Huge Navigator KCNG1 [HugePedia]
snp3D : Map Gene to Disease3755
BioCentury BCIQKCNG1
ClinGenKCNG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3755
Chemical/Pharm GKB GenePA30034
Clinical trialKCNG1
Miscellaneous
canSAR (ICR)KCNG1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNG1
EVEXKCNG1
GoPubMedKCNG1
iHOPKCNG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:09:24 CET 2017

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