Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNG3 (potassium voltage-gated channel modifier subfamily G member 3)

Identity

Alias_namespotassium voltage-gated channel
Alias_symbol (synonym)Kv6.3
Other aliasKV10.1
KV6.3
HGNC (Hugo) KCNG3
LocusID (NCBI) 170850
Atlas_Id 52825
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 42669157 and ends at 42721237 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FEM1B (15q23) / KCNG3 (2p21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNG3   18306
Cards
Entrez_Gene (NCBI)KCNG3  170850  potassium voltage-gated channel modifier subfamily G member 3
AliasesKV10.1; KV6.3
GeneCards (Weizmann)KCNG3
Ensembl hg19 (Hinxton)ENSG00000171126 [Gene_View]  chr2:42669157-42721237 [Contig_View]  KCNG3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171126 [Gene_View]  chr2:42669157-42721237 [Contig_View]  KCNG3 [Vega]
ICGC DataPortalENSG00000171126
TCGA cBioPortalKCNG3
AceView (NCBI)KCNG3
Genatlas (Paris)KCNG3
WikiGenes170850
SOURCE (Princeton)KCNG3
Genetics Home Reference (NIH)KCNG3
Genomic and cartography
GoldenPath hg19 (UCSC)KCNG3  -     chr2:42669157-42721237 -  2p21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNG3  -     2p21   [Description]    (hg38-Dec_2013)
EnsemblKCNG3 - 2p21 [CytoView hg19]  KCNG3 - 2p21 [CytoView hg38]
Mapping of homologs : NCBIKCNG3 [Mapview hg19]  KCNG3 [Mapview hg38]
OMIM606767   
Gene and transcription
Genbank (Entrez)AB070604 AF348982 AF454547 AF454548 BC071558
RefSeq transcript (Entrez)NM_133329 NM_172344
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)KCNG3
Cluster EST : UnigeneHs.352633 [ NCBI ]
CGAP (NCI)Hs.352633
Alternative Splicing GalleryENSG00000171126
Gene ExpressionKCNG3 [ NCBI-GEO ]   KCNG3 [ EBI - ARRAY_EXPRESS ]   KCNG3 [ SEEK ]   KCNG3 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170850
GTEX Portal (Tissue expression)KCNG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAE7
Splice isoforms : SwissVarQ8TAE7
PhosPhoSitePlusQ8TAE7
Domains : Interpro (EBI)BTB/POZ_dom    Channel_four-helix_dom    Ion_trans_dom    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv9    SKP1/BTB/POZ    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNG3
DMDM Disease mutations170850
Blocks (Seattle)KCNG3
SuperfamilyQ8TAE7
Human Protein AtlasENSG00000171126
Peptide AtlasQ8TAE7
HPRD16232
IPIIPI00152048   IPI00172429   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAE7
IntAct (EBI)Q8TAE7
FunCoupENSG00000171126
BioGRIDKCNG3
STRING (EMBL)KCNG3
ZODIACKCNG3
Ontologies - Pathways
QuickGOQ8TAE7
Ontology : AmiGOdelayed rectifier potassium channel activity  protein binding  endoplasmic reticulum  plasma membrane  plasma membrane  voltage-gated potassium channel complex  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
Ontology : EGO-EBIdelayed rectifier potassium channel activity  protein binding  endoplasmic reticulum  plasma membrane  plasma membrane  voltage-gated potassium channel complex  regulation of ion transmembrane transport  protein homooligomerization  potassium ion transmembrane transport  
NDEx NetworkKCNG3
Atlas of Cancer Signalling NetworkKCNG3
Wikipedia pathwaysKCNG3
Orthology - Evolution
OrthoDB170850
GeneTree (enSembl)ENSG00000171126
Phylogenetic Trees/Animal Genes : TreeFamKCNG3
HOVERGENQ8TAE7
HOGENOMQ8TAE7
Homologs : HomoloGeneKCNG3
Homology/Alignments : Family Browser (UCSC)KCNG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNG3
dbVarKCNG3
ClinVarKCNG3
1000_GenomesKCNG3 
Exome Variant ServerKCNG3
ExAC (Exome Aggregation Consortium)KCNG3 (select the gene name)
Genetic variants : HAPMAP170850
Genomic Variants (DGV)KCNG3 [DGVbeta]
DECIPHER (Syndromes)2:42669157-42721237  ENSG00000171126
CONAN: Copy Number AnalysisKCNG3 
Mutations
ICGC Data PortalKCNG3 
TCGA Data PortalKCNG3 
Broad Tumor PortalKCNG3
OASIS PortalKCNG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNG3
DgiDB (Drug Gene Interaction Database)KCNG3
DoCM (Curated mutations)KCNG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNG3 (select a term)
intoGenKCNG3
Cancer3DKCNG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606767   
Orphanet
MedgenKCNG3
Genetic Testing Registry KCNG3
NextProtQ8TAE7 [Medical]
TSGene170850
GENETestsKCNG3
Huge Navigator KCNG3 [HugePedia]
snp3D : Map Gene to Disease170850
BioCentury BCIQKCNG3
ClinGenKCNG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170850
Chemical/Pharm GKB GenePA30036
Clinical trialKCNG3
Miscellaneous
canSAR (ICR)KCNG3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNG3
EVEXKCNG3
GoPubMedKCNG3
iHOPKCNG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:05:50 CEST 2017

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