Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNG4 (potassium channel, voltage gated modifier subfamily G, member 4)

Identity

Alias_namespotassium voltage-gated channel, subfamily G, member 4
Alias_symbol (synonym)Kv6.4
Other aliasKV6.3
KV6.4
HGNC (Hugo) KCNG4
LocusID (NCBI) 93107
Atlas_Id 64779
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 84254741 and ends at 84273356 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNG4   19697
Cards
Entrez_Gene (NCBI)KCNG4  93107  potassium channel, voltage gated modifier subfamily G, member 4
AliasesKV6.3; KV6.4
GeneCards (Weizmann)KCNG4
Ensembl hg19 (Hinxton) [Gene_View]  chr16:84254741-84273356 [Contig_View]  KCNG4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:84254741-84273356 [Contig_View]  KCNG4 [Vega]
TCGA cBioPortalKCNG4
AceView (NCBI)KCNG4
Genatlas (Paris)KCNG4
WikiGenes93107
SOURCE (Princeton)KCNG4
Genetics Home Reference (NIH)KCNG4
Genomic and cartography
GoldenPath hg19 (UCSC)KCNG4  -     chr16:84254741-84273356 -  16q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNG4  -     16q24.1   [Description]    (hg38-Dec_2013)
EnsemblKCNG4 - 16q24.1 [CytoView hg19]  KCNG4 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIKCNG4 [Mapview hg19]  KCNG4 [Mapview hg38]
OMIM607603   
Gene and transcription
Genbank (Entrez)AF348984 AF450108 BC008969 BC109203 BQ185567
RefSeq transcript (Entrez)NM_133490 NM_172347
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)KCNG4
Cluster EST : UnigeneHs.737415 [ NCBI ]
CGAP (NCI)Hs.737415
Gene ExpressionKCNG4 [ NCBI-GEO ]   KCNG4 [ EBI - ARRAY_EXPRESS ]   KCNG4 [ SEEK ]   KCNG4 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93107
GTEX Portal (Tissue expression)KCNG4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDN1
Splice isoforms : SwissVarQ8TDN1
PhosPhoSitePlusQ8TDN1
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    Channel_four-helix_dom    Ion_trans_dom    K_chnl    K_chnl_volt-dep_Kv    K_chnl_volt-dep_Kv9    T1-type_BTB    VG_K_chnl   
Domain families : Pfam (Sanger)BTB_2 (PF02214)    Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam02214    pfam00520   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)KCNG4
DMDM Disease mutations93107
Blocks (Seattle)KCNG4
SuperfamilyQ8TDN1
Peptide AtlasQ8TDN1
HPRD16253
IPIIPI00152565   IPI00215662   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDN1
IntAct (EBI)Q8TDN1
BioGRIDKCNG4
STRING (EMBL)KCNG4
ZODIACKCNG4
Ontologies - Pathways
QuickGOQ8TDN1
Ontology : AmiGOdelayed rectifier potassium channel activity  delayed rectifier potassium channel activity  plasma membrane  plasma membrane  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  ion channel binding  protein homooligomerization  potassium ion transmembrane transport  potassium ion transmembrane transport  
Ontology : EGO-EBIdelayed rectifier potassium channel activity  delayed rectifier potassium channel activity  plasma membrane  plasma membrane  synaptic transmission  voltage-gated potassium channel complex  integral component of membrane  regulation of ion transmembrane transport  ion channel binding  protein homooligomerization  potassium ion transmembrane transport  potassium ion transmembrane transport  
NDEx NetworkKCNG4
Atlas of Cancer Signalling NetworkKCNG4
Wikipedia pathwaysKCNG4
Orthology - Evolution
OrthoDB93107
Phylogenetic Trees/Animal Genes : TreeFamKCNG4
HOVERGENQ8TDN1
HOGENOMQ8TDN1
Homologs : HomoloGeneKCNG4
Homology/Alignments : Family Browser (UCSC)KCNG4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNG4
dbVarKCNG4
ClinVarKCNG4
1000_GenomesKCNG4 
Exome Variant ServerKCNG4
ExAC (Exome Aggregation Consortium)KCNG4 (select the gene name)
Genetic variants : HAPMAP93107
Genomic Variants (DGV)KCNG4 [DGVbeta]
DECIPHER (Syndromes)16:84254741-84273356  
CONAN: Copy Number AnalysisKCNG4 
Mutations
ICGC Data PortalKCNG4 
TCGA Data PortalKCNG4 
Broad Tumor PortalKCNG4
OASIS PortalKCNG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNG4
DgiDB (Drug Gene Interaction Database)KCNG4
DoCM (Curated mutations)KCNG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNG4 (select a term)
intoGenKCNG4
Cancer3DKCNG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607603   
Orphanet
MedgenKCNG4
Genetic Testing Registry KCNG4
NextProtQ8TDN1 [Medical]
TSGene93107
GENETestsKCNG4
Huge Navigator KCNG4 [HugePedia]
snp3D : Map Gene to Disease93107
BioCentury BCIQKCNG4
ClinGenKCNG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93107
Chemical/Pharm GKB GenePA134989953
Clinical trialKCNG4
Miscellaneous
canSAR (ICR)KCNG4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNG4
EVEXKCNG4
GoPubMedKCNG4
iHOPKCNG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:25 CET 2017

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