Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNH1-IT1 (KCNH1 intronic transcript 1)

Identity

Alias_namesKCNH1 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) KCNH1-IT1
LocusID (NCBI) 100874296
Atlas_Id 79757
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 211132279 and ends at 211133374 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)KCNH1-IT1   41351
Cards
Entrez_Gene (NCBI)KCNH1-IT1  100874296  KCNH1 intronic transcript 1
Aliases
GeneCards (Weizmann)KCNH1-IT1
Ensembl hg19 (Hinxton)ENSG00000234233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234233 [Gene_View]  chr1:211132279-211133374 [Contig_View]  KCNH1-IT1 [Vega]
ICGC DataPortalENSG00000234233
TCGA cBioPortalKCNH1-IT1
AceView (NCBI)KCNH1-IT1
Genatlas (Paris)KCNH1-IT1
WikiGenes100874296
SOURCE (Princeton)KCNH1-IT1
Genetics Home Reference (NIH)KCNH1-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)KCNH1-IT1  -     chr1:211132279-211133374 -  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNH1-IT1  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblKCNH1-IT1 - 1q32.2 [CytoView hg19]  KCNH1-IT1 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBIKCNH1-IT1 [Mapview hg19]  KCNH1-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU621567
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNH1-IT1
Cluster EST : UnigeneHs.737764 [ NCBI ]
CGAP (NCI)Hs.737764
Alternative Splicing GalleryENSG00000234233
Gene ExpressionKCNH1-IT1 [ NCBI-GEO ]   KCNH1-IT1 [ EBI - ARRAY_EXPRESS ]   KCNH1-IT1 [ SEEK ]   KCNH1-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNH1-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874296
GTEX Portal (Tissue expression)KCNH1-IT1
Human Protein AtlasENSG00000234233-KCNH1-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KCNH1-IT1
DMDM Disease mutations100874296
Blocks (Seattle)KCNH1-IT1
Human Protein Atlas [tissue]ENSG00000234233-KCNH1-IT1 [tissue]
Protein Interaction databases
FunCoupENSG00000234233
BioGRIDKCNH1-IT1
STRING (EMBL)KCNH1-IT1
ZODIACKCNH1-IT1
Ontologies - Pathways
Huge Navigator KCNH1-IT1 [HugePedia]
snp3D : Map Gene to Disease100874296
BioCentury BCIQKCNH1-IT1
ClinGenKCNH1-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874296
Clinical trialKCNH1-IT1
Miscellaneous
canSAR (ICR)KCNH1-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNH1-IT1
EVEXKCNH1-IT1
GoPubMedKCNH1-IT1
iHOPKCNH1-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:00:34 CET 2017

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