Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNIP1 (potassium voltage-gated channel interacting protein 1)

Identity

Alias_namesKv channel interacting protein 1
Alias_symbol (synonym)KCHIP1
Other aliasVABP
HGNC (Hugo) KCNIP1
LocusID (NCBI) 30820
Atlas_Id 54392
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 169931040 and ends at 170163637 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KCNIP1 (5q35.1) / KCNIP1 (5q35.1)KCNIP1 (5q35.1) / KCTD14 (11q14.1)KCNIP1 (5q35.1) / NEAT1 (11q13.1)
KCNIP1 (5q35.1) / SLC44A2 (19p13.2)KCNIP1 (5q35.1) / TROVE2 (1q31.2)RPL18 (19q13.33) / KCNIP1 (5q35.1)
SLC38A9 (5q11.2) / KCNIP1 (5q35.1)SLC38A9 5q11.2 / KCNIP1 5q35.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)KCNIP1   15521
Cards
Entrez_Gene (NCBI)KCNIP1  30820  potassium voltage-gated channel interacting protein 1
AliasesKCHIP1; VABP
GeneCards (Weizmann)KCNIP1
Ensembl hg19 (Hinxton)ENSG00000182132 [Gene_View]  chr5:169931040-170163637 [Contig_View]  KCNIP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182132 [Gene_View]  chr5:169931040-170163637 [Contig_View]  KCNIP1 [Vega]
ICGC DataPortalENSG00000182132
TCGA cBioPortalKCNIP1
AceView (NCBI)KCNIP1
Genatlas (Paris)KCNIP1
WikiGenes30820
SOURCE (Princeton)KCNIP1
Genetics Home Reference (NIH)KCNIP1
Genomic and cartography
GoldenPath hg19 (UCSC)KCNIP1  -     chr5:169931040-170163637 +  5q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNIP1  -     5q35.1   [Description]    (hg38-Dec_2013)
EnsemblKCNIP1 - 5q35.1 [CytoView hg19]  KCNIP1 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBIKCNIP1 [Mapview hg19]  KCNIP1 [Mapview hg38]
OMIM604660   
Gene and transcription
Genbank (Entrez)AF199597 AI884645 AK074390 AK301775 AY170821
RefSeq transcript (Entrez)NM_001034837 NM_001034838 NM_001278339 NM_001278340 NM_014592
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_011538 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)KCNIP1
Cluster EST : UnigeneHs.484111 [ NCBI ]
CGAP (NCI)Hs.484111
Alternative Splicing GalleryENSG00000182132
Gene ExpressionKCNIP1 [ NCBI-GEO ]   KCNIP1 [ EBI - ARRAY_EXPRESS ]   KCNIP1 [ SEEK ]   KCNIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30820
GTEX Portal (Tissue expression)KCNIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZI2
Splice isoforms : SwissVarQ9NZI2
PhosPhoSitePlusQ9NZI2
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Recoverin   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)KCNIP1
DMDM Disease mutations30820
Blocks (Seattle)KCNIP1
PDB (SRS)1S1E    2I2R    2NZ0   
PDB (PDBSum)1S1E    2I2R    2NZ0   
PDB (IMB)1S1E    2I2R    2NZ0   
PDB (RSDB)1S1E    2I2R    2NZ0   
Structural Biology KnowledgeBase1S1E    2I2R    2NZ0   
SCOP (Structural Classification of Proteins)1S1E    2I2R    2NZ0   
CATH (Classification of proteins structures)1S1E    2I2R    2NZ0   
SuperfamilyQ9NZI2
Human Protein AtlasENSG00000182132
Peptide AtlasQ9NZI2
HPRD06879
IPIIPI00641978   IPI00433691   IPI00845317   IPI00645089   IPI00651687   IPI00974411   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZI2
IntAct (EBI)Q9NZI2
FunCoupENSG00000182132
BioGRIDKCNIP1
STRING (EMBL)KCNIP1
ZODIACKCNIP1
Ontologies - Pathways
QuickGOQ9NZI2
Ontology : AmiGOvoltage-gated ion channel activity  potassium channel activity  calcium ion binding  protein binding  cytoplasm  plasma membrane  voltage-gated potassium channel complex  potassium channel regulator activity  dendrite  extrinsic component of cytoplasmic side of plasma membrane  cardiac conduction  potassium ion transmembrane transport  regulation of potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated ion channel activity  potassium channel activity  calcium ion binding  protein binding  cytoplasm  plasma membrane  voltage-gated potassium channel complex  potassium channel regulator activity  dendrite  extrinsic component of cytoplasmic side of plasma membrane  cardiac conduction  potassium ion transmembrane transport  regulation of potassium ion transmembrane transport  
NDEx NetworkKCNIP1
Atlas of Cancer Signalling NetworkKCNIP1
Wikipedia pathwaysKCNIP1
Orthology - Evolution
OrthoDB30820
GeneTree (enSembl)ENSG00000182132
Phylogenetic Trees/Animal Genes : TreeFamKCNIP1
HOVERGENQ9NZI2
HOGENOMQ9NZI2
Homologs : HomoloGeneKCNIP1
Homology/Alignments : Family Browser (UCSC)KCNIP1
Gene fusions - Rearrangements
Fusion : MitelmanKCNIP1/KCTD14 [5q35.1/11q14.1]  
Fusion : MitelmanSLC38A9/KCNIP1 [5q11.2/5q35.1]  [t(5;5)(q11;q35)]  
Fusion: TCGASLC38A9 5q11.2 KCNIP1 5q35.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNIP1
dbVarKCNIP1
ClinVarKCNIP1
1000_GenomesKCNIP1 
Exome Variant ServerKCNIP1
ExAC (Exome Aggregation Consortium)KCNIP1 (select the gene name)
Genetic variants : HAPMAP30820
Genomic Variants (DGV)KCNIP1 [DGVbeta]
DECIPHER (Syndromes)5:169931040-170163637  ENSG00000182132
CONAN: Copy Number AnalysisKCNIP1 
Mutations
ICGC Data PortalKCNIP1 
TCGA Data PortalKCNIP1 
Broad Tumor PortalKCNIP1
OASIS PortalKCNIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNIP1
DgiDB (Drug Gene Interaction Database)KCNIP1
DoCM (Curated mutations)KCNIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNIP1 (select a term)
intoGenKCNIP1
Cancer3DKCNIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604660   
Orphanet
MedgenKCNIP1
Genetic Testing Registry KCNIP1
NextProtQ9NZI2 [Medical]
TSGene30820
GENETestsKCNIP1
Huge Navigator KCNIP1 [HugePedia]
snp3D : Map Gene to Disease30820
BioCentury BCIQKCNIP1
ClinGenKCNIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30820
Chemical/Pharm GKB GenePA30041
Clinical trialKCNIP1
Miscellaneous
canSAR (ICR)KCNIP1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNIP1
EVEXKCNIP1
GoPubMedKCNIP1
iHOPKCNIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:05:51 CEST 2017

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