Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNIP3 (Kv channel interacting protein 3, calsenilin)

Identity

Other namesCSEN
DREAM
KCHIP3
HGNC (Hugo) KCNIP3
LocusID (NCBI) 30818
Location 2q11.1
Location_base_pair Starts at 96012768 and ends at 96051825 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNIP3   15523
Cards
Entrez_Gene (NCBI)KCNIP3  30818  Kv channel interacting protein 3, calsenilin
GeneCards (Weizmann)KCNIP3
Ensembl (Hinxton)ENSG00000115041 [Gene_View]  chr2:96012768-96051825 [Contig_View]  KCNIP3 [Vega]
AceView (NCBI)KCNIP3
Genatlas (Paris)KCNIP3
WikiGenes30818
SOURCE (Princeton)NM_001034914 NM_013434
Genomic and cartography
GoldenPath (UCSC)KCNIP3  -  2q11.1   chr2:96012768-96051825 +  2q11.1   [Description]    (hg19-Feb_2009)
EnsemblKCNIP3 - 2q11.1 [CytoView]
Mapping of homologs : NCBIKCNIP3 [Mapview]
OMIM604662   
Gene and transcription
Genbank (Entrez)AF120102 AF199599 AF367022 AJ131730 AJ131730
RefSeq transcript (Entrez)NM_001034914 NM_013434
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_022171 NW_001838807 NW_004929303
Consensus coding sequences : CCDS (NCBI)KCNIP3
Cluster EST : UnigeneHs.437376 [ NCBI ]
CGAP (NCI)Hs.437376
Alternative Splicing : Fast-db (Paris)GSHG0016670
Alternative Splicing GalleryENSG00000115041
Gene ExpressionKCNIP3 [ NCBI-GEO ]     KCNIP3 [ SEEK ]   KCNIP3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2W7 (Uniprot)
NextProtQ9Y2W7  [Medical]
With graphics : InterProQ9Y2W7
Splice isoforms : SwissVarQ9Y2W7 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Recoverin   
Related proteins : CluSTrQ9Y2W7
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations30818
Blocks (Seattle)Q9Y2W7
PDB (SRS)2E6W   
PDB (PDBSum)2E6W   
PDB (IMB)2E6W   
PDB (RSDB)2E6W   
Human Protein AtlasENSG00000115041
Peptide AtlasQ9Y2W7
HPRD05232
IPIIPI00294320   IPI00045895   IPI00651627   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2W7
IntAct (EBI)Q9Y2W7
FunCoupENSG00000115041
BioGRIDKCNIP3
InParanoidQ9Y2W7
Interologous Interaction database Q9Y2W7
IntegromeDBKCNIP3
STRING (EMBL)KCNIP3
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription corepressor activity  voltage-gated ion channel activity  potassium channel activity  calcium ion binding  nucleus  endoplasmic reticulum  Golgi apparatus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  intracellular protein transport  apoptotic process  signal transduction  behavior  protein C-terminus binding  potassium channel regulator activity  sensory perception of pain  regulation of neuron apoptotic process  response to pain  calcium-dependent protein binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription corepressor activity  voltage-gated ion channel activity  potassium channel activity  calcium ion binding  nucleus  endoplasmic reticulum  Golgi apparatus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  intracellular protein transport  apoptotic process  signal transduction  behavior  protein C-terminus binding  potassium channel regulator activity  sensory perception of pain  regulation of neuron apoptotic process  response to pain  calcium-dependent protein binding  
Pathways : BIOCARTARepression of Pain Sensation by the Transcriptional Regulator DREAM [Genes]   
REACTOMEKCNIP3
Protein Interaction DatabaseKCNIP3
Wikipedia pathwaysKCNIP3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNIP3
SNP (GeneSNP Utah)KCNIP3
SNP : HGBaseKCNIP3
Genetic variants : HAPMAPKCNIP3
1000_GenomesKCNIP3 
ICGC programENSG00000115041 
Somatic Mutations in Cancer : COSMICKCNIP3 
CONAN: Copy Number AnalysisKCNIP3 
Mutations and Diseases : HGMDKCNIP3
OMIM604662   
GENETestsKCNIP3
Disease Genetic AssociationKCNIP3
Huge Navigator KCNIP3 [HugePedia]  KCNIP3 [HugeCancerGEM]
Genomic VariantsKCNIP3  KCNIP3 [DGVbeta]
Exome VariantKCNIP3
dbVarKCNIP3
ClinVarKCNIP3
snp3D : Map Gene to Disease30818
General knowledge
Homologs : HomoloGeneKCNIP3
Homology/Alignments : Family Browser (UCSC)KCNIP3
Phylogenetic Trees/Animal Genes : TreeFamKCNIP3
Chemical/Protein Interactions : CTD30818
Chemical/Pharm GKB GenePA26934
Clinical trialKCNIP3
Cancer Resource (Charite)ENSG00000115041
Other databases
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
CoreMineKCNIP3
iHOPKCNIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:48:55 CEST 2014

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