Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNIP4 (potassium voltage-gated channel interacting protein 4)

Identity

Alias_namesKv channel interacting protein 4
Alias_symbol (synonym)CALP
KCHIP4
MGC44947
Other alias
HGNC (Hugo) KCNIP4
LocusID (NCBI) 80333
Atlas_Id 49981
Location 4p15.31  [Link to chromosome band 4p15]
Location_base_pair Starts at 20728616 and ends at 21697695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL15 (5q11.2) / KCNIP4 (4p15.31)ATG3 (3q13.2) / KCNIP4 (4p15.31)KCNIP4 (4p15.31) / FLRT2 (14q31.3)
KCNIP4 (4p15.31) / GSN (9q33.2)KCNIP4 (4p15.31) / KCNIP4 (4p15.31)KCNIP4 (4p15.31) / KIF1A (2q37.3)
ZNF430 (19p12) / KCNIP4 (4p15.31)ZNF430 19p12 / KCNIP4 4p15.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNIP4   30083
Cards
Entrez_Gene (NCBI)KCNIP4  80333  potassium voltage-gated channel interacting protein 4
AliasesCALP; KCHIP4
GeneCards (Weizmann)KCNIP4
Ensembl hg19 (Hinxton)ENSG00000185774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185774 [Gene_View]  chr4:20728616-21697695 [Contig_View]  KCNIP4 [Vega]
ICGC DataPortalENSG00000185774
TCGA cBioPortalKCNIP4
AceView (NCBI)KCNIP4
Genatlas (Paris)KCNIP4
WikiGenes80333
SOURCE (Princeton)KCNIP4
Genetics Home Reference (NIH)KCNIP4
Genomic and cartography
GoldenPath hg38 (UCSC)KCNIP4  -     chr4:20728616-21697695 -  4p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNIP4  -     4p15.31   [Description]    (hg19-Feb_2009)
EnsemblKCNIP4 - 4p15.31 [CytoView hg19]  KCNIP4 - 4p15.31 [CytoView hg38]
Mapping of homologs : NCBIKCNIP4 [Mapview hg19]  KCNIP4 [Mapview hg38]
OMIM608182   
Gene and transcription
Genbank (Entrez)AF302044 AF305072 AF367023 AF367024 AF453246
RefSeq transcript (Entrez)NM_001035003 NM_001035004 NM_025221 NM_147181 NM_147182 NM_147183
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_052969 NT_187540
Consensus coding sequences : CCDS (NCBI)KCNIP4
Cluster EST : UnigeneHs.655705 [ NCBI ]
CGAP (NCI)Hs.655705
Alternative Splicing GalleryENSG00000185774
Gene ExpressionKCNIP4 [ NCBI-GEO ]   KCNIP4 [ EBI - ARRAY_EXPRESS ]   KCNIP4 [ SEEK ]   KCNIP4 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNIP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80333
GTEX Portal (Tissue expression)KCNIP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIL6
Splice isoforms : SwissVarQ6PIL6
PhosPhoSitePlusQ6PIL6
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)KCNIP4
DMDM Disease mutations80333
Blocks (Seattle)KCNIP4
SuperfamilyQ6PIL6
Human Protein AtlasENSG00000185774
Peptide AtlasQ6PIL6
HPRD12184
IPIIPI00419434   IPI00022716   IPI00160317   IPI00168749   IPI00651648   IPI00654632   IPI01010011   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIL6
IntAct (EBI)Q6PIL6
FunCoupENSG00000185774
BioGRIDKCNIP4
STRING (EMBL)KCNIP4
ZODIACKCNIP4
Ontologies - Pathways
QuickGOQ6PIL6
Ontology : AmiGOvoltage-gated ion channel activity  potassium channel activity  calcium ion binding  cytoplasm  endoplasmic reticulum  cytosol  plasma membrane  plasma membrane  plasma membrane  voltage-gated potassium channel complex  potassium channel regulator activity  cardiac conduction  regulation of molecular function  potassium ion transmembrane transport  protein localization to plasma membrane  regulation of potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated ion channel activity  potassium channel activity  calcium ion binding  cytoplasm  endoplasmic reticulum  cytosol  plasma membrane  plasma membrane  plasma membrane  voltage-gated potassium channel complex  potassium channel regulator activity  cardiac conduction  regulation of molecular function  potassium ion transmembrane transport  protein localization to plasma membrane  regulation of potassium ion transmembrane transport  
NDEx NetworkKCNIP4
Atlas of Cancer Signalling NetworkKCNIP4
Wikipedia pathwaysKCNIP4
Orthology - Evolution
OrthoDB80333
GeneTree (enSembl)ENSG00000185774
Phylogenetic Trees/Animal Genes : TreeFamKCNIP4
HOVERGENQ6PIL6
HOGENOMQ6PIL6
Homologs : HomoloGeneKCNIP4
Homology/Alignments : Family Browser (UCSC)KCNIP4
Gene fusions - Rearrangements
Fusion : MitelmanZNF430/KCNIP4 [19p12/4p15.31]  [t(4;19)(p15;p12)]  
Fusion: TCGAZNF430 19p12 KCNIP4 4p15.31 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNIP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNIP4
dbVarKCNIP4
ClinVarKCNIP4
1000_GenomesKCNIP4 
Exome Variant ServerKCNIP4
ExAC (Exome Aggregation Consortium)KCNIP4 (select the gene name)
Genetic variants : HAPMAP80333
Genomic Variants (DGV)KCNIP4 [DGVbeta]
DECIPHERKCNIP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNIP4 
Mutations
ICGC Data PortalKCNIP4 
TCGA Data PortalKCNIP4 
Broad Tumor PortalKCNIP4
OASIS PortalKCNIP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNIP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNIP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNIP4
DgiDB (Drug Gene Interaction Database)KCNIP4
DoCM (Curated mutations)KCNIP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNIP4 (select a term)
intoGenKCNIP4
Cancer3DKCNIP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608182   
Orphanet
MedgenKCNIP4
Genetic Testing Registry KCNIP4
NextProtQ6PIL6 [Medical]
TSGene80333
GENETestsKCNIP4
Huge Navigator KCNIP4 [HugePedia]
snp3D : Map Gene to Disease80333
BioCentury BCIQKCNIP4
ClinGenKCNIP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80333
Chemical/Pharm GKB GenePA134893552
Clinical trialKCNIP4
Miscellaneous
canSAR (ICR)KCNIP4 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNIP4
EVEXKCNIP4
GoPubMedKCNIP4
iHOPKCNIP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:21:12 CEST 2017

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