Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCNIP4 (Kv channel interacting protein 4)

Identity

Other namesCALP
KCHIP4
HGNC (Hugo) KCNIP4
LocusID (NCBI) 80333
Location 4p15.31
Location_base_pair Starts at 20730239 and ends at 21699318 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNIP4   30083
Entrez_Gene (NCBI)KCNIP4  80333  Kv channel interacting protein 4
Cards
GeneCards (Weizmann)KCNIP4
Ensembl (Hinxton)ENSG00000185774 [Gene_View]  chr4:20730239-21699318 [Contig_View]  KCNIP4 [Vega]
AceView (NCBI)KCNIP4
Genatlas (Paris)KCNIP4
SOURCE (Stanford)NM_001035003 NM_001035004 NM_025221 NM_147181 NM_147182 NM_147183
Genomic and cartography
GoldenPath (UCSC)KCNIP4  -  4p15.31   chr4:20730239-21699318 -  4p15.31   [Description]    (hg19-Feb_2009)
EnsemblKCNIP4 - 4p15.31 [CytoView]
Mapping of homologs : NCBIKCNIP4 [Mapview]
OMIM608182   
Gene and transcription
Genbank (Entrez)AF302044 AF305072 AF367023 AF367024 AF453246
RefSeq transcript (SRS)NM_001035003 NM_001035004 NM_025221 NM_147181 NM_147182 NM_147183
RefSeq transcript (Entrez)NM_001035003 NM_001035004 NM_025221 NM_147181 NM_147182 NM_147183
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_006316 NW_001838900 NW_004078016
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_006316 NW_001838900 NW_004078016
Consensus coding sequences : CCDS (NCBI)KCNIP4
Cluster EST : UnigeneHs.655705 [ SRS ] Hs.655705 [ NCBI ]
CGAP (NCI)Hs.655705
Alternative Splicing : Fast-db (Paris)GSHG0023167
Alternative Splicing GalleryENSG00000185774
Gene ExpressionKCNIP4 [ NCBI-GEO ]   KCNIP4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIL6 (SRS) Q6PIL6 (Uniprot)
NextProtQ6PIL6
With graphics : InterProQ6PIL6
Splice isoforms : SwissVarQ6PIL6(Swissvar)
Domaine pattern : Prosite (SRS)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (SRS)EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_HAND_2    EF_hand_Ca-bd    Recoverin   
Domains : Interpro (EBI)EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_HAND_2    EF_hand_Ca-bd    Recoverin   
Related proteins : CluSTrQ6PIL6
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM80333
Blocks (Seattle)Q6PIL6
Human Protein AtlasENSG00000185774
HPRD12184
IPIIPI00419434   IPI00022716   IPI00160317   IPI00168749   IPI00651648   IPI00654632   IPI01010011   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIL6
IntAct (EBI)Q6PIL6
FunCoupENSG00000185774
REACTOMEKCNIP4
Protein Interaction Database80333
BioGRIDKCNIP4
InParanoidQ6PIL6
Interologous Interaction database Q6PIL6
IntegromeDBKCNIP4
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNIP4
SNP (GeneSNP Utah)KCNIP4
SNP : HGBaseKCNIP4
Genetic variants : HAPMAPKCNIP4
Somatic Mutations in Cancer : COSMICKCNIP4 
CONAN: Copy Number AnalysisKCNIP4 
Mutations and Diseases : HGMDKCNIP4
OMIM608182   
GENETests608182   
Disease Genetic AssociationKCNIP4
Huge Navigator KCNIP4 [HugePedia]  KCNIP4 [HugeCancerGEM]
Genomic VariantsKCNIP4  KCNIP4 [DGVbeta]
snp3D : Map Gene to Disease80333
General knowledge
Homologs : HomoloGeneKCNIP4
Homology/Alignments : Family Browser (UCSC)KCNIP4
Phylogenetic Trees/Animal Genes : TreeFamKCNIP4
Chemical/Protein Interactions : CTD80333
Chemical/Pharm GKB GenePA134893552
Clinical trialKCNIP4
Cancer Resource (Charite)ENSG00000185774
Ontology : AmiGOvoltage-gated ion channel activity  potassium channel activity  calcium ion binding  plasma membrane  dendrite  neuronal cell body  
Ontology : EGO-EBIvoltage-gated ion channel activity  potassium channel activity  calcium ion binding  plasma membrane  dendrite  neuronal cell body  
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
PubGeneKCNIP4
iHOPKCNIP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:24:29 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.