Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCNJ15 (potassium voltage-gated channel subfamily J member 15)

Identity

Alias_namespotassium inwardly-rectifying channel, subfamily J, member 15
Alias_symbol (synonym)Kir4.2
Kir1.3
IRKK
Other aliasKIR1.3
KIR4.2
HGNC (Hugo) KCNJ15
LocusID (NCBI) 3772
Atlas_Id 64788
Location 21q22.13  [Link to chromosome band 21q22]
Location_base_pair Starts at 38256698 and ends at 38301824 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHST8 (19q13.11) / KCNJ15 (21q22.13)KCNJ15 (21q22.13) / KCNJ15 (21q22.13)KCNJ15 (21q22.13) / ZFPM1 (16q24.2)
WRB (21q22.2) / KCNJ15 (21q22.13)CHST8 KCNJ15WRB KCNJ15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNJ15   6261
Cards
Entrez_Gene (NCBI)KCNJ15  3772  potassium voltage-gated channel subfamily J member 15
AliasesIRKK; KIR1.3; KIR4.2
GeneCards (Weizmann)KCNJ15
Ensembl hg19 (Hinxton)ENSG00000157551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157551 [Gene_View]  chr21:38256698-38301824 [Contig_View]  KCNJ15 [Vega]
ICGC DataPortalENSG00000157551
TCGA cBioPortalKCNJ15
AceView (NCBI)KCNJ15
Genatlas (Paris)KCNJ15
WikiGenes3772
SOURCE (Princeton)KCNJ15
Genetics Home Reference (NIH)KCNJ15
Genomic and cartography
GoldenPath hg38 (UCSC)KCNJ15  -     chr21:38256698-38301824 +  21q22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNJ15  -     21q22.13   [Description]    (hg19-Feb_2009)
EnsemblKCNJ15 - 21q22.13 [CytoView hg19]  KCNJ15 - 21q22.13 [CytoView hg38]
Mapping of homologs : NCBIKCNJ15 [Mapview hg19]  KCNJ15 [Mapview hg38]
OMIM602106   
Gene and transcription
Genbank (Entrez)AI344546 AI453386 AK092958 AK292812 BC013327
RefSeq transcript (Entrez)NM_001276435 NM_001276436 NM_001276437 NM_001276438 NM_001276439 NM_002243 NM_170736 NM_170737
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNJ15
Cluster EST : UnigeneHs.411299 [ NCBI ]
CGAP (NCI)Hs.411299
Alternative Splicing GalleryENSG00000157551
Gene ExpressionKCNJ15 [ NCBI-GEO ]   KCNJ15 [ EBI - ARRAY_EXPRESS ]   KCNJ15 [ SEEK ]   KCNJ15 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNJ15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3772
GTEX Portal (Tissue expression)KCNJ15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99712   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99712  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99712
Splice isoforms : SwissVarQ99712
PhosPhoSitePlusQ99712
Domains : Interpro (EBI)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir1.3    K_chnl_inward-rec_Kir_cyto   
Domain families : Pfam (Sanger)IRK (PF01007)   
Domain families : Pfam (NCBI)pfam01007   
Conserved Domain (NCBI)KCNJ15
DMDM Disease mutations3772
Blocks (Seattle)KCNJ15
SuperfamilyQ99712
Human Protein AtlasENSG00000157551
Peptide AtlasQ99712
HPRD03659
IPIIPI00064771   IPI00790015   IPI01023005   IPI00789512   IPI00788831   IPI00792407   IPI00791268   IPI00793007   
Protein Interaction databases
DIP (DOE-UCLA)Q99712
IntAct (EBI)Q99712
FunCoupENSG00000157551
BioGRIDKCNJ15
STRING (EMBL)KCNJ15
ZODIACKCNJ15
Ontologies - Pathways
QuickGOQ99712
Ontology : AmiGOinward rectifier potassium channel activity  protein binding  plasma membrane  integral component of plasma membrane  potassium ion transport  potassium ion import  G-protein activated inward rectifier potassium channel activity  regulation of ion transmembrane transport  
Ontology : EGO-EBIinward rectifier potassium channel activity  protein binding  plasma membrane  integral component of plasma membrane  potassium ion transport  potassium ion import  G-protein activated inward rectifier potassium channel activity  regulation of ion transmembrane transport  
Pathways : KEGGGastric acid secretion   
NDEx NetworkKCNJ15
Atlas of Cancer Signalling NetworkKCNJ15
Wikipedia pathwaysKCNJ15
Orthology - Evolution
OrthoDB3772
GeneTree (enSembl)ENSG00000157551
Phylogenetic Trees/Animal Genes : TreeFamKCNJ15
HOVERGENQ99712
HOGENOMQ99712
Homologs : HomoloGeneKCNJ15
Homology/Alignments : Family Browser (UCSC)KCNJ15
Gene fusions - Rearrangements
Fusion: TCGACHST8 KCNJ15
Fusion: TCGAWRB KCNJ15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNJ15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNJ15
dbVarKCNJ15
ClinVarKCNJ15
1000_GenomesKCNJ15 
Exome Variant ServerKCNJ15
ExAC (Exome Aggregation Consortium)KCNJ15 (select the gene name)
Genetic variants : HAPMAP3772
Genomic Variants (DGV)KCNJ15 [DGVbeta]
DECIPHERKCNJ15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNJ15 
Mutations
ICGC Data PortalKCNJ15 
TCGA Data PortalKCNJ15 
Broad Tumor PortalKCNJ15
OASIS PortalKCNJ15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNJ15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNJ15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch KCNJ15
DgiDB (Drug Gene Interaction Database)KCNJ15
DoCM (Curated mutations)KCNJ15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNJ15 (select a term)
intoGenKCNJ15
Cancer3DKCNJ15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602106   
Orphanet
MedgenKCNJ15
Genetic Testing Registry KCNJ15
NextProtQ99712 [Medical]
TSGene3772
GENETestsKCNJ15
Huge Navigator KCNJ15 [HugePedia]
snp3D : Map Gene to Disease3772
BioCentury BCIQKCNJ15
ClinGenKCNJ15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3772
Chemical/Pharm GKB GenePA30046
Clinical trialKCNJ15
Miscellaneous
canSAR (ICR)KCNJ15 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNJ15
EVEXKCNJ15
GoPubMedKCNJ15
iHOPKCNJ15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:17:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.