Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCNJ16 (potassium voltage-gated channel subfamily J member 16)

Identity

Other aliasBIR9
KIR5.1
HGNC (Hugo) KCNJ16
LocusID (NCBI) 3773
Atlas_Id 56740
Location 17q24.3  [Link to chromosome band 17q24]
Location_base_pair Starts at 70075225 and ends at 70135605 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNJ16   6262
Cards
Entrez_Gene (NCBI)KCNJ16  3773  potassium voltage-gated channel subfamily J member 16
AliasesBIR9; KIR5.1
GeneCards (Weizmann)KCNJ16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:70075225-70135605 [Contig_View]  KCNJ16 [Vega]
TCGA cBioPortalKCNJ16
AceView (NCBI)KCNJ16
Genatlas (Paris)KCNJ16
WikiGenes3773
SOURCE (Princeton)KCNJ16
Genetics Home Reference (NIH)KCNJ16
Genomic and cartography
GoldenPath hg38 (UCSC)KCNJ16  -     chr17:70075225-70135605 +  17q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNJ16  -     17q24.3   [Description]    (hg19-Feb_2009)
EnsemblKCNJ16 - 17q24.3 [CytoView hg19]  KCNJ16 - 17q24.3 [CytoView hg38]
Mapping of homologs : NCBIKCNJ16 [Mapview hg19]  KCNJ16 [Mapview hg38]
OMIM605722   
Gene and transcription
Genbank (Entrez)AF153815 AF153816 AF153817 AF179353 AK225944
RefSeq transcript (Entrez)NM_001270422 NM_001291622 NM_001291623 NM_001291624 NM_001291625 NM_018658 NM_170741 NM_170742
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNJ16
Cluster EST : UnigeneHs.463985 [ NCBI ]
CGAP (NCI)Hs.463985
Gene ExpressionKCNJ16 [ NCBI-GEO ]   KCNJ16 [ EBI - ARRAY_EXPRESS ]   KCNJ16 [ SEEK ]   KCNJ16 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNJ16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3773
GTEX Portal (Tissue expression)KCNJ16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPI9
Splice isoforms : SwissVarQ9NPI9
PhosPhoSitePlusQ9NPI9
Domains : Interpro (EBI)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir5    K_chnl_inward-rec_Kir_cyto   
Domain families : Pfam (Sanger)IRK (PF01007)   
Domain families : Pfam (NCBI)pfam01007   
Conserved Domain (NCBI)KCNJ16
DMDM Disease mutations3773
Blocks (Seattle)KCNJ16
SuperfamilyQ9NPI9
Peptide AtlasQ9NPI9
IPIIPI00014915   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPI9
IntAct (EBI)Q9NPI9
BioGRIDKCNJ16
STRING (EMBL)KCNJ16
ZODIACKCNJ16
Ontologies - Pathways
QuickGOQ9NPI9
Ontology : AmiGOinward rectifier potassium channel activity  inward rectifier potassium channel activity  inward rectifier potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion transport  voltage-gated potassium channel complex  potassium ion import  G-protein activated inward rectifier potassium channel activity  basolateral plasma membrane  regulation of ion transmembrane transport  
Ontology : EGO-EBIinward rectifier potassium channel activity  inward rectifier potassium channel activity  inward rectifier potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion transport  voltage-gated potassium channel complex  potassium ion import  G-protein activated inward rectifier potassium channel activity  basolateral plasma membrane  regulation of ion transmembrane transport  
Pathways : KEGGGastric acid secretion   
NDEx NetworkKCNJ16
Atlas of Cancer Signalling NetworkKCNJ16
Wikipedia pathwaysKCNJ16
Orthology - Evolution
OrthoDB3773
Phylogenetic Trees/Animal Genes : TreeFamKCNJ16
HOVERGENQ9NPI9
HOGENOMQ9NPI9
Homologs : HomoloGeneKCNJ16
Homology/Alignments : Family Browser (UCSC)KCNJ16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNJ16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNJ16
dbVarKCNJ16
ClinVarKCNJ16
1000_GenomesKCNJ16 
Exome Variant ServerKCNJ16
ExAC (Exome Aggregation Consortium)KCNJ16 (select the gene name)
Genetic variants : HAPMAP3773
Genomic Variants (DGV)KCNJ16 [DGVbeta]
DECIPHERKCNJ16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNJ16 
Mutations
ICGC Data PortalKCNJ16 
TCGA Data PortalKCNJ16 
Broad Tumor PortalKCNJ16
OASIS PortalKCNJ16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNJ16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNJ16
BioMutasearch KCNJ16
DgiDB (Drug Gene Interaction Database)KCNJ16
DoCM (Curated mutations)KCNJ16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNJ16 (select a term)
intoGenKCNJ16
Cancer3DKCNJ16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605722   
Orphanet
MedgenKCNJ16
Genetic Testing Registry KCNJ16
NextProtQ9NPI9 [Medical]
TSGene3773
GENETestsKCNJ16
Target ValidationKCNJ16
Huge Navigator KCNJ16 [HugePedia]
snp3D : Map Gene to Disease3773
BioCentury BCIQKCNJ16
ClinGenKCNJ16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3773
Chemical/Pharm GKB GenePA30047
Clinical trialKCNJ16
Miscellaneous
canSAR (ICR)KCNJ16 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNJ16
EVEXKCNJ16
GoPubMedKCNJ16
iHOPKCNJ16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:04:29 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.