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KCNJ18 (potassium voltage-gated channel subfamily J member 18)

Identity

Alias_namespotassium inwardly-rectifying channel, subfamily J, member 18
Alias_symbol (synonym)KIR2.6
TTPP2
Other alias
HGNC (Hugo) KCNJ18
LocusID (NCBI) 100134444
Atlas_Id 64790
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 21692523 and ends at 21704612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNJ18   39080
Cards
Entrez_Gene (NCBI)KCNJ18  100134444  potassium voltage-gated channel subfamily J member 18
AliasesKIR2.6; TTPP2
GeneCards (Weizmann)KCNJ18
Ensembl hg19 (Hinxton)ENSG00000260458 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260458 [Gene_View]  chr17:21692523-21704612 [Contig_View]  KCNJ18 [Vega]
ICGC DataPortalENSG00000260458
TCGA cBioPortalKCNJ18
AceView (NCBI)KCNJ18
Genatlas (Paris)KCNJ18
WikiGenes100134444
SOURCE (Princeton)KCNJ18
Genetics Home Reference (NIH)KCNJ18
Genomic and cartography
GoldenPath hg38 (UCSC)KCNJ18  -     chr17:21692523-21704612 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNJ18  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblKCNJ18 - 17p11.2 [CytoView hg19]  KCNJ18 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIKCNJ18 [Mapview hg19]  KCNJ18 [Mapview hg38]
OMIM613236   613239   
Gene and transcription
Genbank (Entrez)FJ434338
RefSeq transcript (Entrez)NM_001194958
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNJ18
Cluster EST : UnigeneHs.200629 [ NCBI ]
CGAP (NCI)Hs.200629
Alternative Splicing GalleryENSG00000260458
Gene ExpressionKCNJ18 [ NCBI-GEO ]   KCNJ18 [ EBI - ARRAY_EXPRESS ]   KCNJ18 [ SEEK ]   KCNJ18 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNJ18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100134444
GTEX Portal (Tissue expression)KCNJ18
Human Protein AtlasENSG00000260458-KCNJ18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB7U540   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB7U540  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB7U540
Splice isoforms : SwissVarB7U540
PhosPhoSitePlusB7U540
Domains : Interpro (EBI)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir2.2    K_chnl_inward-rec_Kir_cyto    K_chnl_inward-rec_Kir_N   
Domain families : Pfam (Sanger)IRK (PF01007)    IRK_N (PF08466)   
Domain families : Pfam (NCBI)pfam01007    pfam08466   
Conserved Domain (NCBI)KCNJ18
DMDM Disease mutations100134444
Blocks (Seattle)KCNJ18
SuperfamilyB7U540
Human Protein Atlas [tissue]ENSG00000260458-KCNJ18 [tissue]
Peptide AtlasB7U540
IPIIPI00947376   
Protein Interaction databases
DIP (DOE-UCLA)B7U540
IntAct (EBI)B7U540
FunCoupENSG00000260458
BioGRIDKCNJ18
STRING (EMBL)KCNJ18
ZODIACKCNJ18
Ontologies - Pathways
QuickGOB7U540
Ontology : AmiGOinward rectifier potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion import  regulation of ion transmembrane transport  
Ontology : EGO-EBIinward rectifier potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion import  regulation of ion transmembrane transport  
NDEx NetworkKCNJ18
Atlas of Cancer Signalling NetworkKCNJ18
Wikipedia pathwaysKCNJ18
Orthology - Evolution
OrthoDB100134444
GeneTree (enSembl)ENSG00000260458
Phylogenetic Trees/Animal Genes : TreeFamKCNJ18
HOVERGENB7U540
HOGENOMB7U540
Homologs : HomoloGeneKCNJ18
Homology/Alignments : Family Browser (UCSC)KCNJ18
Gene fusions - Rearrangements
Fusion: Tumor Portal KCNJ18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNJ18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNJ18
dbVarKCNJ18
ClinVarKCNJ18
1000_GenomesKCNJ18 
Exome Variant ServerKCNJ18
ExAC (Exome Aggregation Consortium)ENSG00000260458
GNOMAD BrowserENSG00000260458
Genetic variants : HAPMAP100134444
Genomic Variants (DGV)KCNJ18 [DGVbeta]
DECIPHERKCNJ18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNJ18 
Mutations
ICGC Data PortalKCNJ18 
TCGA Data PortalKCNJ18 
Broad Tumor PortalKCNJ18
OASIS PortalKCNJ18 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKCNJ18
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch KCNJ18
DgiDB (Drug Gene Interaction Database)KCNJ18
DoCM (Curated mutations)KCNJ18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNJ18 (select a term)
intoGenKCNJ18
Cancer3DKCNJ18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613236    613239   
Orphanet11144   
MedgenKCNJ18
Genetic Testing Registry KCNJ18
NextProtB7U540 [Medical]
TSGene100134444
GENETestsKCNJ18
Target ValidationKCNJ18
Huge Navigator KCNJ18 [HugePedia]
snp3D : Map Gene to Disease100134444
BioCentury BCIQKCNJ18
ClinGenKCNJ18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100134444
Chemical/Pharm GKB GenePA166049037
Clinical trialKCNJ18
Miscellaneous
canSAR (ICR)KCNJ18 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNJ18
EVEXKCNJ18
GoPubMedKCNJ18
iHOPKCNJ18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:08 CET 2017

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