Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KCNJ2 (potassium inwardly-rectifying channel, subfamily J, member 2)

Identity

Other namesATFB9
HHBIRK1
HHIRK1
IRK1
KIR2.1
LQT7
SQT3
HGNC (Hugo) KCNJ2
LocusID (NCBI) 3759
Location 17q24.3
Location_base_pair Starts at 68165676 and ends at 68176183 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)KCNJ2   6263
Entrez_Gene (NCBI)KCNJ2  3759  potassium inwardly-rectifying channel, subfamily J, member 2
Cards
GeneCards (Weizmann)KCNJ2
Ensembl (Hinxton)ENSG00000123700 [Gene_View]  chr17:68165676-68176183 [Contig_View]  KCNJ2 [Vega]
AceView (NCBI)KCNJ2
Genatlas (Paris)KCNJ2
SOURCE (Stanford)NM_000891
Genomic and cartography
GoldenPath (UCSC)KCNJ2  -  17q24.3   chr17:68165676-68176183 +  17q24.3   [Description]    (hg19-Feb_2009)
EnsemblKCNJ2 - 17q24.3 [CytoView]
Mapping of homologs : NCBIKCNJ2 [Mapview]
OMIM170390   600681   609622   613980   
Gene and transcription
Genbank (Entrez)AF011904 AF021139 AF153820 BC152811 U12507
RefSeq transcript (SRS)NM_000891
RefSeq transcript (Entrez)NM_000891
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NG_008798 NT_010783 NW_001838454 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008798 NT_010783 NW_001838454 NW_004078092
Consensus coding sequences : CCDS (NCBI)KCNJ2
Cluster EST : UnigeneHs.1547 [ SRS ] Hs.1547 [ NCBI ]
CGAP (NCI)Hs.1547
Alternative Splicing : Fast-db (Paris)GSHG0012776
Alternative Splicing GalleryENSG00000123700
Gene ExpressionKCNJ2 [ NCBI-GEO ]   KCNJ2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP63252 (SRS) P63252 (Uniprot)
NextProtP63252
With graphics : InterProP63252
Splice isoforms : SwissVarP63252(Swissvar)
Domains : Interpro (SRS)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir2.1    K_chnl_inward-rec_Kir_cyto    K_chnl_inward-rec_Kir_N   
Domains : Interpro (EBI)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir2.1    K_chnl_inward-rec_Kir_cyto    K_chnl_inward-rec_Kir_N   
Related proteins : CluSTrP63252
Domain families : Pfam (SRS)IRK (PF01007)    IRK_N (PF08466)   
Domain families : Pfam (Sanger)IRK (PF01007)    IRK_N (PF08466)   
Domain families : Pfam (NCBI)pfam01007    pfam08466   
DMDM3759
Blocks (Seattle)P63252
Human Protein AtlasENSG00000123700
HPRD02815
IPIIPI00007614   
Protein Interaction databases
DIP (DOE-UCLA)P63252
IntAct (EBI)P63252
FunCoupENSG00000123700
REACTOMEKCNJ2
Protein Interaction Database3759
BioGRIDKCNJ2
InParanoidP63252
Interologous Interaction database P63252
IntegromeDBKCNJ2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNJ2
SNP (GeneSNP Utah)KCNJ2
SNP : HGBaseKCNJ2
Genetic variants : HAPMAPKCNJ2
Somatic Mutations in Cancer : COSMICKCNJ2 
CONAN: Copy Number AnalysisKCNJ2 
Mutations and Diseases : HGMDKCNJ2
OMIM170390    600681    609622    613980   
GENETests170390    600681    609622    613980   
Disease Genetic AssociationKCNJ2
Huge Navigator KCNJ2 [HugePedia]  KCNJ2 [HugeCancerGEM]
Genomic VariantsKCNJ2  KCNJ2 [DGVbeta]
snp3D : Map Gene to Disease3759
General knowledge
Homologs : HomoloGeneKCNJ2
Homology/Alignments : Family Browser (UCSC)KCNJ2
Phylogenetic Trees/Animal Genes : TreeFamKCNJ2
Chemical/Protein Interactions : CTD3759
Chemical/Pharm GKB GenePA214
Clinical trialKCNJ2
Cancer Resource (Charite)ENSG00000123700
Ontology : AmiGOinward rectifier potassium channel activity  plasma membrane  integral to plasma membrane  potassium ion transport  synaptic transmission  dendrite  identical protein binding  neuronal cell body  
Ontology : EGO-EBIinward rectifier potassium channel activity  plasma membrane  integral to plasma membrane  potassium ion transport  synaptic transmission  dendrite  identical protein binding  neuronal cell body  
Other databases
Probes
Litterature
PubMed93 Pubmed reference(s) in Entrez
PubGeneKCNJ2
iHOPKCNJ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:33 CEST 2013
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