KCNJ6 (potassium inwardly-rectifying channel, subfamily J, member 6)

Identity

Other names	BIR1
	GIRK2
	KATP2
	KCNJ7
	KIR3.2
	MGC126596
	hiGIRK2
HGNC	KCNJ6
Location	21q22.1
Location_base_pair	Starts at 37918657 and ends at 38210566 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	KCNJ6   6267
Entrez_Gene	KCNJ6  3763  potassium inwardly-rectifying channel, subfamily J, member 6
	Cards
GeneCards	KCNJ6
Ensembl	KCNJ6 [Search_View]   ENSG00000157542 [Gene_View]
Genatlas	KCNJ6
GeneLynx	KCNJ6
eGenome	KCNJ6
euGene	3763
	Genomic and cartography
GoldenPath	KCNJ6  -  21q22.1   chr21:37918657-38210566 -  21q22.13   [Description]    (hg18-March_2006)
Ensembl	KCNJ6 - 21q22.13 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	KCNJ6
	Gene and transcription
Genbank	AJ001894 [ ENTREZ ]
Genbank	AK313997 [ ENTREZ ]
Genbank	BC101547 [ ENTREZ ]
Genbank	BF110130 [ ENTREZ ]
Genbank	D87327 [ ENTREZ ]
RefSeq	NM_002240 [ SRS ]    NM_002240 [ ENTREZ ]
RefSeq	AC_000064 [ SRS ]    AC_000064 [ ENTREZ ]
RefSeq	AC_000153 [ SRS ]    AC_000153 [ ENTREZ ]
RefSeq	NC_000021 [ SRS ]    NC_000021 [ ENTREZ ]
RefSeq	NT_011512 [ SRS ]    NT_011512 [ ENTREZ ]
RefSeq	NW_001838707 [ SRS ]    NW_001838707 [ ENTREZ ]
RefSeq	NW_927384 [ SRS ]    NW_927384 [ ENTREZ ]
AceView	KCNJ6 AceView - NCBI
Unigene	Hs.658533 [ SRS ]    Hs.658533 [ NCBI ]     HS658533 [ spliceNest ]
Fast-db	2779 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P48051 [ SRS]    P48051 [ EXPASY ]     P48051 [ INTERPRO ]     P48051 [ UNIPROT ]
Interpro	IPR016449 K_chnl_inward-rec_Kir [ SRS ]    IPR016449 K_chnl_inward-rec_Kir [ EBI ]
Interpro	IPR001838 K_chnl_inward-rec_Kir-like [ SRS ]    IPR001838 K_chnl_inward-rec_Kir-like [ EBI ]
Interpro	IPR003275 K_chnl_inward-rec_Kir3.2 [ SRS ]    IPR003275 K_chnl_inward-rec_Kir3.2 [ EBI ]
Interpro	IPR013521 K_chnl_inward-rec_Kir_Cr2 [ SRS ]    IPR013521 K_chnl_inward-rec_Kir_Cr2 [ EBI ]
Interpro	IPR013518 K_chnl_inward-rec_Kir_cyto [ SRS ]    IPR013518 K_chnl_inward-rec_Kir_cyto [ EBI ]
CluSTr	P48051
Pfam	PF01007 IRK [ SRS ]    PF01007 IRK [ Sanger ]    pfam01007 [ NCBI-CDD ]
Prodom	PD001103 K+channel_IR[INRA-Toulouse]
Prodom	P48051 IRK6_HUMAN [ Domain structure ]   P48051 IRK6_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P48051
HPRD	02929
	Protein Interaction databases
DIP	P48051
IntAct	P48051
	Polymorphism : SNP, mutations, diseases
OMIM	600877    [ map ]
GENECLINICS	600877
SNP	KCNJ6 [dbSNP-NCBI]
SNP	NM_002240 [SNP-NCI]
SNP	KCNJ6 [GeneSNPs - Utah]  KCNJ6] [HGBASE - SRS]
HAPMAP	KCNJ6 [HAPMAP]
HGMD	KCNJ6
	General knowledge
Family Browser	KCNJ6 [UCSC Family Browser]
SOURCE	NM_002240
SMD	Hs.658533
SAGE	Hs.658533
GO	voltage-gated ion channel activity [Amigo]  voltage-gated ion channel activity
GO	Golgi apparatus [Amigo]  Golgi apparatus
GO	plasma membrane [Amigo]  plasma membrane
GO	ion transport [Amigo]  ion transport
GO	potassium ion transport [Amigo]  potassium ion transport
GO	voltage-gated potassium channel complex [Amigo]  voltage-gated potassium channel complex
GO	G-protein activated inward rectifier potassium channel activity [Amigo]  G-protein activated inward rectifier potassium channel activity
GO	integral to membrane [Amigo]  integral to membrane
GO	potassium ion binding [Amigo]  potassium ion binding
PubGene	KCNJ6
TreeFam	KCNJ6
CTD	3763 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	KCNJ6 Related clones (RZPD - Berlin)
	PubMed
PubMed	31 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:47:29 2008