Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNJ9 (potassium voltage-gated channel subfamily J member 9)

Identity

Alias_namespotassium inwardly-rectifying channel
Alias_symbol (synonym)Kir3.3
GIRK3
Other aliasKIR3.3
HGNC (Hugo) KCNJ9
LocusID (NCBI) 3765
Atlas_Id 45699
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 160081570 and ends at 160089422 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNJ9   6270
Cards
Entrez_Gene (NCBI)KCNJ9  3765  potassium voltage-gated channel subfamily J member 9
AliasesGIRK3; KIR3.3
GeneCards (Weizmann)KCNJ9
Ensembl hg19 (Hinxton)ENSG00000162728 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162728 [Gene_View]  ENSG00000162728 [Sequence]  chr1:160081570-160089422 [Contig_View]  KCNJ9 [Vega]
ICGC DataPortalENSG00000162728
TCGA cBioPortalKCNJ9
AceView (NCBI)KCNJ9
Genatlas (Paris)KCNJ9
WikiGenes3765
SOURCE (Princeton)KCNJ9
Genetics Home Reference (NIH)KCNJ9
Genomic and cartography
GoldenPath hg38 (UCSC)KCNJ9  -     chr1:160081570-160089422 +  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNJ9  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblKCNJ9 - 1q23.2 [CytoView hg19]  KCNJ9 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIKCNJ9 [Mapview hg19]  KCNJ9 [Mapview hg38]
OMIM600932   
Gene and transcription
Genbank (Entrez)BC117516 BC117517 BC117518 BC117519 U52152
RefSeq transcript (Entrez)NM_004983
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNJ9
Cluster EST : UnigeneHs.66726 [ NCBI ]
CGAP (NCI)Hs.66726
Alternative Splicing GalleryENSG00000162728
Gene ExpressionKCNJ9 [ NCBI-GEO ]   KCNJ9 [ EBI - ARRAY_EXPRESS ]   KCNJ9 [ SEEK ]   KCNJ9 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNJ9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3765
GTEX Portal (Tissue expression)KCNJ9
Human Protein AtlasENSG00000162728-KCNJ9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92806   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92806  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92806
Splice isoforms : SwissVarQ92806
PhosPhoSitePlusQ92806
Domains : Interpro (EBI)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir3.3    K_chnl_inward-rec_Kir_cyto   
Domain families : Pfam (Sanger)IRK (PF01007)   
Domain families : Pfam (NCBI)pfam01007   
Conserved Domain (NCBI)KCNJ9
DMDM Disease mutations3765
Blocks (Seattle)KCNJ9
SuperfamilyQ92806
Human Protein Atlas [tissue]ENSG00000162728-KCNJ9 [tissue]
Peptide AtlasQ92806
HPRD02959
IPIIPI00294849   
Protein Interaction databases
DIP (DOE-UCLA)Q92806
IntAct (EBI)Q92806
FunCoupENSG00000162728
BioGRIDKCNJ9
STRING (EMBL)KCNJ9
ZODIACKCNJ9
Ontologies - Pathways
QuickGOQ92806
Ontology : AmiGOinward rectifier potassium channel activity  protein binding  plasma membrane  potassium ion import  G-protein activated inward rectifier potassium channel activity  regulation of ion transmembrane transport  regulation of ion transmembrane transport  
Ontology : EGO-EBIinward rectifier potassium channel activity  protein binding  plasma membrane  potassium ion import  G-protein activated inward rectifier potassium channel activity  regulation of ion transmembrane transport  regulation of ion transmembrane transport  
Pathways : KEGGCircadian entrainment    Retrograde endocannabinoid signaling    Serotonergic synapse    Dopaminergic synapse    Estrogen signaling pathway    Morphine addiction   
NDEx NetworkKCNJ9
Atlas of Cancer Signalling NetworkKCNJ9
Wikipedia pathwaysKCNJ9
Orthology - Evolution
OrthoDB3765
GeneTree (enSembl)ENSG00000162728
Phylogenetic Trees/Animal Genes : TreeFamKCNJ9
HOVERGENQ92806
HOGENOMQ92806
Homologs : HomoloGeneKCNJ9
Homology/Alignments : Family Browser (UCSC)KCNJ9
Gene fusions - Rearrangements
Fusion : QuiverKCNJ9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNJ9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNJ9
dbVarKCNJ9
ClinVarKCNJ9
1000_GenomesKCNJ9 
Exome Variant ServerKCNJ9
ExAC (Exome Aggregation Consortium)ENSG00000162728
GNOMAD BrowserENSG00000162728
Varsome BrowserKCNJ9
Genetic variants : HAPMAP3765
Genomic Variants (DGV)KCNJ9 [DGVbeta]
DECIPHERKCNJ9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNJ9 
Mutations
ICGC Data PortalKCNJ9 
TCGA Data PortalKCNJ9 
Broad Tumor PortalKCNJ9
OASIS PortalKCNJ9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNJ9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNJ9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNJ9
DgiDB (Drug Gene Interaction Database)KCNJ9
DoCM (Curated mutations)KCNJ9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNJ9 (select a term)
intoGenKCNJ9
Cancer3DKCNJ9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600932   
Orphanet
DisGeNETKCNJ9
MedgenKCNJ9
Genetic Testing Registry KCNJ9
NextProtQ92806 [Medical]
TSGene3765
GENETestsKCNJ9
Target ValidationKCNJ9
Huge Navigator KCNJ9 [HugePedia]
snp3D : Map Gene to Disease3765
BioCentury BCIQKCNJ9
ClinGenKCNJ9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3765
Chemical/Pharm GKB GenePA30051
Clinical trialKCNJ9
Miscellaneous
canSAR (ICR)KCNJ9 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNJ9
EVEXKCNJ9
GoPubMedKCNJ9
iHOPKCNJ9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:30:15 CEST 2018

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