Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KCNJ9 (potassium inwardly-rectifying channel, subfamily J, member 9)

Identity

Other namesGIRK3
KIR3.3
HGNC (Hugo) KCNJ9
LocusID (NCBI) 3765
Location 1q23.2
Location_base_pair Starts at 160051360 and ends at 160059212 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNJ9   6270
Entrez_Gene (NCBI)KCNJ9  3765  potassium inwardly-rectifying channel, subfamily J, member 9
Cards
GeneCards (Weizmann)KCNJ9
Ensembl (Hinxton)ENSG00000162728 [Gene_View]  chr1:160051360-160059212 [Contig_View]  KCNJ9 [Vega]
AceView (NCBI)KCNJ9
Genatlas (Paris)KCNJ9
SOURCE (Stanford)NM_004983
Genomic and cartography
GoldenPath (UCSC)KCNJ9  -  1q23.2   chr1:160051360-160059212 +  1q23.2   [Description]    (hg19-Feb_2009)
EnsemblKCNJ9 - 1q23.2 [CytoView]
Mapping of homologs : NCBIKCNJ9 [Mapview]
OMIM600932   
Gene and transcription
Genbank (Entrez)BC167777 U52152
RefSeq transcript (SRS)NM_004983
RefSeq transcript (Entrez)NM_004983
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838531 NW_004077999
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838531 NW_004077999
Consensus coding sequences : CCDS (NCBI)KCNJ9
Cluster EST : UnigeneHs.66726 [ SRS ] Hs.66726 [ NCBI ]
CGAP (NCI)Hs.66726
Alternative Splicing : Fast-db (Paris)GSHG0001084
Alternative Splicing GalleryENSG00000162728
Gene ExpressionKCNJ9 [ NCBI-GEO ]   KCNJ9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92806 (SRS) Q92806 (Uniprot)
NextProtQ92806
With graphics : InterProQ92806
Splice isoforms : SwissVarQ92806(Swissvar)
Domains : Interpro (SRS)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir3.3    K_chnl_inward-rec_Kir_cyto   
Domains : Interpro (EBI)Ig_E-set    K_chnl_inward-rec_Kir    K_chnl_inward-rec_Kir3.3    K_chnl_inward-rec_Kir_cyto   
Related proteins : CluSTrQ92806
Domain families : Pfam (SRS)IRK (PF01007)   
Domain families : Pfam (Sanger)IRK (PF01007)   
Domain families : Pfam (NCBI)pfam01007   
DMDM3765
Blocks (Seattle)Q92806
Human Protein AtlasENSG00000162728
HPRD02959
IPIIPI00294849   
Protein Interaction databases
DIP (DOE-UCLA)Q92806
IntAct (EBI)Q92806
FunCoupENSG00000162728
REACTOMEKCNJ9
Protein Interaction Database3765
BioGRIDKCNJ9
InParanoidQ92806
Interologous Interaction database Q92806
IntegromeDBKCNJ9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNJ9
SNP (GeneSNP Utah)KCNJ9
SNP : HGBaseKCNJ9
Genetic variants : HAPMAPKCNJ9
Somatic Mutations in Cancer : COSMICKCNJ9 
CONAN: Copy Number AnalysisKCNJ9 
Mutations and Diseases : HGMDKCNJ9
OMIM600932   
GENETests600932   
Disease Genetic AssociationKCNJ9
Huge Navigator KCNJ9 [HugePedia]  KCNJ9 [HugeCancerGEM]
Genomic VariantsKCNJ9  KCNJ9 [DGVbeta]
snp3D : Map Gene to Disease3765
General knowledge
Homologs : HomoloGeneKCNJ9
Homology/Alignments : Family Browser (UCSC)KCNJ9
Phylogenetic Trees/Animal Genes : TreeFamKCNJ9
Chemical/Protein Interactions : CTD3765
Chemical/Pharm GKB GenePA30051
Clinical trialKCNJ9
Cancer Resource (Charite)ENSG00000162728
Ontology : AmiGOprotein binding  plasma membrane  synaptic transmission  G-protein activated inward rectifier potassium channel activity  integral to membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  synaptic transmission  G-protein activated inward rectifier potassium channel activity  integral to membrane  
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
PubGeneKCNJ9
iHOPKCNJ9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:48 CEST 2013
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