Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KCNK13 (potassium two pore domain channel subfamily K member 13)

Identity

Alias (NCBI)K2p13.1
THIK-1
THIK1
HGNC (Hugo) KCNK13
HGNC Alias symbK2p13.1
THIK-1
THIK1
HGNC Previous namepotassium channel, subfamily K, member 13
 potassium channel, two pore domain subfamily K, member 13
LocusID (NCBI) 56659
Atlas_Id 64795
Location 14q32.11  [Link to chromosome band 14q32]
Location_base_pair Starts at 90061765 and ends at 90185857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNK13   6275
Cards
Entrez_Gene (NCBI)KCNK13    potassium two pore domain channel subfamily K member 13
AliasesK2p13.1; THIK-1; THIK1
GeneCards (Weizmann)KCNK13
Ensembl hg19 (Hinxton)ENSG00000152315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152315 [Gene_View]  ENSG00000152315 [Sequence]  chr14:90061765-90185857 [Contig_View]  KCNK13 [Vega]
ICGC DataPortalENSG00000152315
TCGA cBioPortalKCNK13
AceView (NCBI)KCNK13
Genatlas (Paris)KCNK13
SOURCE (Princeton)KCNK13
Genetics Home Reference (NIH)KCNK13
Genomic and cartography
GoldenPath hg38 (UCSC)KCNK13  -     chr14:90061765-90185857 +  14q32.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNK13  -     14q32.11   [Description]    (hg19-Feb_2009)
GoldenPathKCNK13 - 14q32.11 [CytoView hg19]  KCNK13 - 14q32.11 [CytoView hg38]
ImmunoBaseENSG00000152315
genome Data Viewer NCBIKCNK13 [Mapview hg19]  
OMIM607367   
Gene and transcription
Genbank (Entrez)AF287303 AW117567 BC012779 EU978942
RefSeq transcript (Entrez)NM_022054
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNK13
Alternative Splicing GalleryENSG00000152315
Gene ExpressionKCNK13 [ NCBI-GEO ]   KCNK13 [ EBI - ARRAY_EXPRESS ]   KCNK13 [ SEEK ]   KCNK13 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNK13 [ Firebrowse - Broad ]
GenevisibleExpression of KCNK13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56659
GTEX Portal (Tissue expression)KCNK13
Human Protein AtlasENSG00000152315-KCNK13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HB14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HB14
Splice isoforms : SwissVarQ9HB14
PhosPhoSitePlusQ9HB14
Domains : Interpro (EBI)2pore_dom_K_chnl    2pore_dom_K_chnl_THIK    K_chnl_dom   
Domain families : Pfam (Sanger)Ion_trans_2 (PF07885)   
Domain families : Pfam (NCBI)pfam07885   
Conserved Domain (NCBI)KCNK13
Blocks (Seattle)KCNK13
SuperfamilyQ9HB14
Human Protein Atlas [tissue]ENSG00000152315-KCNK13 [tissue]
Peptide AtlasQ9HB14
HPRD09563
IPIIPI00171921   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB14
IntAct (EBI)Q9HB14
BioGRIDKCNK13
STRING (EMBL)KCNK13
ZODIACKCNK13
Ontologies - Pathways
QuickGOQ9HB14
Ontology : AmiGOvoltage-gated ion channel activity  plasma membrane  integral component of plasma membrane  potassium ion leak channel activity  stabilization of membrane potential  regulation of ion transmembrane transport  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated ion channel activity  plasma membrane  integral component of plasma membrane  potassium ion leak channel activity  stabilization of membrane potential  regulation of ion transmembrane transport  potassium ion transmembrane transport  
NDEx NetworkKCNK13
Atlas of Cancer Signalling NetworkKCNK13
Wikipedia pathwaysKCNK13
Orthology - Evolution
OrthoDB56659
GeneTree (enSembl)ENSG00000152315
Phylogenetic Trees/Animal Genes : TreeFamKCNK13
HOGENOMQ9HB14
Homologs : HomoloGeneKCNK13
Homology/Alignments : Family Browser (UCSC)KCNK13
Gene fusions - Rearrangements
Fusion : QuiverKCNK13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNK13 [hg38]
dbVarKCNK13
ClinVarKCNK13
MonarchKCNK13
1000_GenomesKCNK13 
Exome Variant ServerKCNK13
GNOMAD BrowserENSG00000152315
Varsome BrowserKCNK13
Genomic Variants (DGV)KCNK13 [DGVbeta]
DECIPHERKCNK13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNK13 
Mutations
ICGC Data PortalKCNK13 
TCGA Data PortalKCNK13 
Broad Tumor PortalKCNK13
OASIS PortalKCNK13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNK13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKCNK13
Mutations and Diseases : HGMDKCNK13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNK13
DgiDB (Drug Gene Interaction Database)KCNK13
DoCM (Curated mutations)KCNK13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNK13 (select a term)
intoGenKCNK13
Cancer3DKCNK13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607367   
Orphanet
DisGeNETKCNK13
MedgenKCNK13
Genetic Testing Registry KCNK13
NextProtQ9HB14 [Medical]
GENETestsKCNK13
Target ValidationKCNK13
Huge Navigator KCNK13 [HugePedia]
ClinGenKCNK13
Clinical trials, drugs, therapy
MyCancerGenomeKCNK13
Protein Interactions : CTD
Pharm GKB GenePA30055
Clinical trialKCNK13
Miscellaneous
canSAR (ICR)KCNK13 (select the gene name)
HarmonizomeKCNK13
DataMed IndexKCNK13
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNK13
EVEXKCNK13
GoPubMedKCNK13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:58:28 CET 2020
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