Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNK16 (potassium two pore domain channel subfamily K member 16)

Identity

Alias_namespotassium channel, subfamily K, member 16
potassium channel, two pore domain subfamily K, member 16
Alias_symbol (synonym)K2p16.1
TALK-1
TALK1
Other alias
HGNC (Hugo) KCNK16
LocusID (NCBI) 83795
Atlas_Id 64797
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 39314698 and ends at 39322554 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNK16   14464
Cards
Entrez_Gene (NCBI)KCNK16  83795  potassium two pore domain channel subfamily K member 16
AliasesK2p16.1; TALK-1; TALK1
GeneCards (Weizmann)KCNK16
Ensembl hg19 (Hinxton)ENSG00000095981 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095981 [Gene_View]  chr6:39314698-39322554 [Contig_View]  KCNK16 [Vega]
ICGC DataPortalENSG00000095981
TCGA cBioPortalKCNK16
AceView (NCBI)KCNK16
Genatlas (Paris)KCNK16
WikiGenes83795
SOURCE (Princeton)KCNK16
Genetics Home Reference (NIH)KCNK16
Genomic and cartography
GoldenPath hg38 (UCSC)KCNK16  -     chr6:39314698-39322554 -  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNK16  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblKCNK16 - 6p21.2 [CytoView hg19]  KCNK16 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBIKCNK16 [Mapview hg19]  KCNK16 [Mapview hg38]
OMIM607369   
Gene and transcription
Genbank (Entrez)AF358909 AY253145 AY253146 AY253147 BC111860
RefSeq transcript (Entrez)NM_001135105 NM_001135106 NM_001135107 NM_032115
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNK16
Cluster EST : UnigeneHs.287765 [ NCBI ]
CGAP (NCI)Hs.287765
Alternative Splicing GalleryENSG00000095981
Gene ExpressionKCNK16 [ NCBI-GEO ]   KCNK16 [ EBI - ARRAY_EXPRESS ]   KCNK16 [ SEEK ]   KCNK16 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNK16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83795
GTEX Portal (Tissue expression)KCNK16
Human Protein AtlasENSG00000095981-KCNK16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96T55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96T55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96T55
Splice isoforms : SwissVarQ96T55
PhosPhoSitePlusQ96T55
Domains : Interpro (EBI)2pore_dom_K_chnl    2pore_dom_K_chnl_TASK    K_chnl_dom   
Domain families : Pfam (Sanger)Ion_trans_2 (PF07885)   
Domain families : Pfam (NCBI)pfam07885   
Conserved Domain (NCBI)KCNK16
DMDM Disease mutations83795
Blocks (Seattle)KCNK16
SuperfamilyQ96T55
Human Protein Atlas [tissue]ENSG00000095981-KCNK16 [tissue]
Peptide AtlasQ96T55
HPRD09565
IPIIPI00045912   IPI00451448   IPI00844272   IPI00451446   IPI00966822   
Protein Interaction databases
DIP (DOE-UCLA)Q96T55
IntAct (EBI)Q96T55
FunCoupENSG00000095981
BioGRIDKCNK16
STRING (EMBL)KCNK16
ZODIACKCNK16
Ontologies - Pathways
QuickGOQ96T55
Ontology : AmiGOvoltage-gated ion channel activity  potassium channel activity  potassium channel activity  protein binding  plasma membrane  potassium ion transport  integral component of membrane  regulation of ion transmembrane transport  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated ion channel activity  potassium channel activity  potassium channel activity  protein binding  plasma membrane  potassium ion transport  integral component of membrane  regulation of ion transmembrane transport  potassium ion transmembrane transport  
NDEx NetworkKCNK16
Atlas of Cancer Signalling NetworkKCNK16
Wikipedia pathwaysKCNK16
Orthology - Evolution
OrthoDB83795
GeneTree (enSembl)ENSG00000095981
Phylogenetic Trees/Animal Genes : TreeFamKCNK16
HOVERGENQ96T55
HOGENOMQ96T55
Homologs : HomoloGeneKCNK16
Homology/Alignments : Family Browser (UCSC)KCNK16
Gene fusions - Rearrangements
Fusion : QuiverKCNK16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNK16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNK16
dbVarKCNK16
ClinVarKCNK16
1000_GenomesKCNK16 
Exome Variant ServerKCNK16
ExAC (Exome Aggregation Consortium)ENSG00000095981
GNOMAD BrowserENSG00000095981
Genetic variants : HAPMAP83795
Genomic Variants (DGV)KCNK16 [DGVbeta]
DECIPHERKCNK16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNK16 
Mutations
ICGC Data PortalKCNK16 
TCGA Data PortalKCNK16 
Broad Tumor PortalKCNK16
OASIS PortalKCNK16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNK16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNK16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNK16
DgiDB (Drug Gene Interaction Database)KCNK16
DoCM (Curated mutations)KCNK16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNK16 (select a term)
intoGenKCNK16
Cancer3DKCNK16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607369   
Orphanet
DisGeNETKCNK16
MedgenKCNK16
Genetic Testing Registry KCNK16
NextProtQ96T55 [Medical]
TSGene83795
GENETestsKCNK16
Target ValidationKCNK16
Huge Navigator KCNK16 [HugePedia]
snp3D : Map Gene to Disease83795
BioCentury BCIQKCNK16
ClinGenKCNK16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83795
Chemical/Pharm GKB GenePA30057
Clinical trialKCNK16
Miscellaneous
canSAR (ICR)KCNK16 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNK16
EVEXKCNK16
GoPubMedKCNK16
iHOPKCNK16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:22:35 CET 2018

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