Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KCNK5 (potassium channel, subfamily K, member 5)

Identity

Other namesK2p5.1
TASK-2
TASK2
HGNC (Hugo) KCNK5
LocusID (NCBI) 8645
Location 6p21.2
Location_base_pair Starts at 39156747 and ends at 39197251 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)KCNK5   6280
Entrez_Gene (NCBI)KCNK5  8645  potassium channel, subfamily K, member 5
Cards
GeneCards (Weizmann)KCNK5
Ensembl (Hinxton)ENSG00000164626 [Gene_View]  chr6:39156747-39197251 [Contig_View]  KCNK5 [Vega]
AceView (NCBI)KCNK5
Genatlas (Paris)KCNK5
SOURCE (Stanford)NM_003740
Genomic and cartography
GoldenPath (UCSC)KCNK5  -  6p21.2   chr6:39156747-39197251 -  6p21.2   [Description]    (hg19-Feb_2009)
EnsemblKCNK5 - 6p21.2 [CytoView]
Mapping of homologs : NCBIKCNK5 [Mapview]
OMIM603493   
Gene and transcription
Genbank (Entrez)AF084830 AK001897 AK314298 BC060793 BC069573
RefSeq transcript (SRS)NM_003740
RefSeq transcript (Entrez)NM_003740
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838980 NW_004078026
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838980 NW_004078026
Consensus coding sequences : CCDS (NCBI)KCNK5
Cluster EST : UnigeneHs.444448 [ SRS ] Hs.444448 [ NCBI ]
CGAP (NCI)Hs.444448
Alternative Splicing : Fast-db (Paris)GSHG0026585
Alternative Splicing GalleryENSG00000164626
Gene ExpressionKCNK5 [ NCBI-GEO ]   KCNK5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95279 (SRS) O95279 (Uniprot)
NextProtO95279
With graphics : InterProO95279
Splice isoforms : SwissVarO95279(Swissvar)
Domains : Interpro (SRS)2pore_dom_K_chnl    2pore_dom_K_chnl_TASK    Ion_trans_2   
Domains : Interpro (EBI)2pore_dom_K_chnl    2pore_dom_K_chnl_TASK    Ion_trans_2   
Related proteins : CluSTrO95279
Domain families : Pfam (SRS)Ion_trans_2 (PF07885)   
Domain families : Pfam (Sanger)Ion_trans_2 (PF07885)   
Domain families : Pfam (NCBI)pfam07885   
DMDM8645
Blocks (Seattle)O95279
Human Protein AtlasENSG00000164626
HPRD04604
IPIIPI00029507   
Protein Interaction databases
DIP (DOE-UCLA)O95279
IntAct (EBI)O95279
FunCoupENSG00000164626
REACTOMEKCNK5
Protein Interaction Database8645
BioGRIDKCNK5
InParanoidO95279
Interologous Interaction database O95279
IntegromeDBKCNK5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNK5
SNP (GeneSNP Utah)KCNK5
SNP : HGBaseKCNK5
Genetic variants : HAPMAPKCNK5
Somatic Mutations in Cancer : COSMICKCNK5 
CONAN: Copy Number AnalysisKCNK5 
Mutations and Diseases : HGMDKCNK5
OMIM603493   
GENETests603493   
Disease Genetic AssociationKCNK5
Huge Navigator KCNK5 [HugePedia]  KCNK5 [HugeCancerGEM]
Genomic VariantsKCNK5  KCNK5 [DGVbeta]
snp3D : Map Gene to Disease8645
General knowledge
Homologs : HomoloGeneKCNK5
Homology/Alignments : Family Browser (UCSC)KCNK5
Phylogenetic Trees/Animal Genes : TreeFamKCNK5
Chemical/Protein Interactions : CTD8645
Chemical/Pharm GKB GenePA30062
Clinical trialKCNK5
Cancer Resource (Charite)ENSG00000164626
Ontology : AmiGOvoltage-gated ion channel activity  potassium channel activity  integral to plasma membrane  potassium ion transport  excretion  
Ontology : EGO-EBIvoltage-gated ion channel activity  potassium channel activity  integral to plasma membrane  potassium ion transport  excretion  
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneKCNK5
iHOPKCNK5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:37:02 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.