Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNK7 (potassium two pore domain channel subfamily K member 7)

Identity

Alias_namespotassium channel, subfamily K, member 7
potassium channel, two pore domain subfamily K, member 7
Alias_symbol (synonym)K2p7.1
Other aliasTWIK3
HGNC (Hugo) KCNK7
LocusID (NCBI) 10089
Atlas_Id 64800
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65592855 and ends at 65595996 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNK7   6282
Cards
Entrez_Gene (NCBI)KCNK7  10089  potassium two pore domain channel subfamily K member 7
AliasesK2p7.1; TWIK3
GeneCards (Weizmann)KCNK7
Ensembl hg19 (Hinxton)ENSG00000173338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173338 [Gene_View]  chr11:65592855-65595996 [Contig_View]  KCNK7 [Vega]
ICGC DataPortalENSG00000173338
TCGA cBioPortalKCNK7
AceView (NCBI)KCNK7
Genatlas (Paris)KCNK7
WikiGenes10089
SOURCE (Princeton)KCNK7
Genetics Home Reference (NIH)KCNK7
Genomic and cartography
GoldenPath hg38 (UCSC)KCNK7  -     chr11:65592855-65595996 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNK7  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblKCNK7 - 11q13.1 [CytoView hg19]  KCNK7 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIKCNK7 [Mapview hg19]  KCNK7 [Mapview hg38]
OMIM603940   
Gene and transcription
Genbank (Entrez)AF110522 AF110523 AF110524 BC103809 BC103810
RefSeq transcript (Entrez)NM_005714 NM_033347 NM_033348 NM_033455 NM_033456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KCNK7
Cluster EST : UnigeneHs.175218 [ NCBI ]
CGAP (NCI)Hs.175218
Alternative Splicing GalleryENSG00000173338
Gene ExpressionKCNK7 [ NCBI-GEO ]   KCNK7 [ EBI - ARRAY_EXPRESS ]   KCNK7 [ SEEK ]   KCNK7 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNK7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10089
GTEX Portal (Tissue expression)KCNK7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2U2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2U2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2U2
Splice isoforms : SwissVarQ9Y2U2
PhosPhoSitePlusQ9Y2U2
Domains : Interpro (EBI)2pore_dom_K_chnl    2pore_dom_K_chnl_TASK    2pore_dom_K_chnl_TWIK    K_chnl_dom   
Domain families : Pfam (Sanger)Ion_trans_2 (PF07885)   
Domain families : Pfam (NCBI)pfam07885   
Conserved Domain (NCBI)KCNK7
DMDM Disease mutations10089
Blocks (Seattle)KCNK7
SuperfamilyQ9Y2U2
Human Protein AtlasENSG00000173338
Peptide AtlasQ9Y2U2
HPRD06804
IPIIPI00032486   IPI00217046   IPI00217050   IPI00979429   IPI00979969   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2U2
IntAct (EBI)Q9Y2U2
FunCoupENSG00000173338
BioGRIDKCNK7
STRING (EMBL)KCNK7
ZODIACKCNK7
Ontologies - Pathways
QuickGOQ9Y2U2
Ontology : AmiGOvoltage-gated ion channel activity  potassium channel activity  plasma membrane  potassium ion transport  integral component of membrane  regulation of ion transmembrane transport  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated ion channel activity  potassium channel activity  plasma membrane  potassium ion transport  integral component of membrane  regulation of ion transmembrane transport  potassium ion transmembrane transport  
NDEx NetworkKCNK7
Atlas of Cancer Signalling NetworkKCNK7
Wikipedia pathwaysKCNK7
Orthology - Evolution
OrthoDB10089
GeneTree (enSembl)ENSG00000173338
Phylogenetic Trees/Animal Genes : TreeFamKCNK7
HOVERGENQ9Y2U2
HOGENOMQ9Y2U2
Homologs : HomoloGeneKCNK7
Homology/Alignments : Family Browser (UCSC)KCNK7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKCNK7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNK7
dbVarKCNK7
ClinVarKCNK7
1000_GenomesKCNK7 
Exome Variant ServerKCNK7
ExAC (Exome Aggregation Consortium)KCNK7 (select the gene name)
Genetic variants : HAPMAP10089
Genomic Variants (DGV)KCNK7 [DGVbeta]
DECIPHERKCNK7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKCNK7 
Mutations
ICGC Data PortalKCNK7 
TCGA Data PortalKCNK7 
Broad Tumor PortalKCNK7
OASIS PortalKCNK7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNK7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKCNK7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNK7
DgiDB (Drug Gene Interaction Database)KCNK7
DoCM (Curated mutations)KCNK7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNK7 (select a term)
intoGenKCNK7
Cancer3DKCNK7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603940   
Orphanet
MedgenKCNK7
Genetic Testing Registry KCNK7
NextProtQ9Y2U2 [Medical]
TSGene10089
GENETestsKCNK7
Target ValidationKCNK7
Huge Navigator KCNK7 [HugePedia]
snp3D : Map Gene to Disease10089
BioCentury BCIQKCNK7
ClinGenKCNK7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10089
Chemical/Pharm GKB GenePA30064
Clinical trialKCNK7
Miscellaneous
canSAR (ICR)KCNK7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNK7
EVEXKCNK7
GoPubMedKCNK7
iHOPKCNK7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:11 CEST 2017

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