Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNK9 (potassium channel, subfamily K, member 9)

Identity

Other namesK2p9.1
KT3.2
TASK-3
TASK3
HGNC (Hugo) KCNK9
LocusID (NCBI) 51305
Location 8q24.3
Location_base_pair Starts at 140629365 and ends at 140715299 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KCNK9   6283
Cards
Entrez_Gene (NCBI)KCNK9  51305  potassium channel, subfamily K, member 9
GeneCards (Weizmann)KCNK9
Ensembl (Hinxton)ENSG00000169427 [Gene_View]  chr8:140629365-140715299 [Contig_View]  KCNK9 [Vega]
AceView (NCBI)KCNK9
Genatlas (Paris)KCNK9
WikiGenes51305
SOURCE (Princeton)NM_001282534 NM_016601
Genomic and cartography
GoldenPath (UCSC)KCNK9  -  8q24.3   chr8:140629365-140715299 -  8q24.3   [Description]    (hg19-Feb_2009)
EnsemblKCNK9 - 8q24.3 [CytoView]
Mapping of homologs : NCBIKCNK9 [Mapview]
OMIM605874   612292   
Gene and transcription
Genbank (Entrez)AF212829 AF248241 AF257080 AF279809 AK090707
RefSeq transcript (Entrez)NM_001282534 NM_016601
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_012842 NT_008046 NW_001839140 NW_004929340
Consensus coding sequences : CCDS (NCBI)KCNK9
Cluster EST : UnigeneHs.664608 [ NCBI ]
CGAP (NCI)Hs.664608
Alternative Splicing : Fast-db (Paris)GSHG0029889
Alternative Splicing GalleryENSG00000169427
Gene ExpressionKCNK9 [ NCBI-GEO ]     KCNK9 [ SEEK ]   KCNK9 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPC2 (Uniprot)
NextProtQ9NPC2  [Medical]
With graphics : InterProQ9NPC2
Splice isoforms : SwissVarQ9NPC2 (Swissvar)
Domains : Interpro (EBI)2pore_dom_K_chnl    2pore_dom_K_chnl_dom    2pore_dom_K_chnl_TASK    KCNK9   
Related proteins : CluSTrQ9NPC2
Domain families : Pfam (Sanger)Ion_trans_2 (PF07885)   
Domain families : Pfam (NCBI)pfam07885   
DMDM Disease mutations51305
Blocks (Seattle)Q9NPC2
PDB (SRS)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
PDB (PDBSum)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
PDB (IMB)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
PDB (RSDB)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
Human Protein AtlasENSG00000169427
Peptide AtlasQ9NPC2
HPRD16167
IPIIPI00014792   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPC2
IntAct (EBI)Q9NPC2
FunCoupENSG00000169427
BioGRIDKCNK9
InParanoidQ9NPC2
Interologous Interaction database Q9NPC2
IntegromeDBKCNK9
STRING (EMBL)KCNK9
Ontologies - Pathways
Ontology : AmiGOvoltage-gated ion channel activity  potassium channel activity  plasma membrane  potassium ion transport  synaptic transmission  synaptic vesicle  membrane  integral to membrane  protein homodimerization activity  protein heterodimerization activity  cochlea development  
Ontology : EGO-EBIvoltage-gated ion channel activity  potassium channel activity  plasma membrane  potassium ion transport  synaptic transmission  synaptic vesicle  membrane  integral to membrane  protein homodimerization activity  protein heterodimerization activity  cochlea development  
REACTOMEKCNK9
Protein Interaction DatabaseKCNK9
Wikipedia pathwaysKCNK9
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KCNK9
SNP (GeneSNP Utah)KCNK9
SNP : HGBaseKCNK9
Genetic variants : HAPMAPKCNK9
1000_GenomesKCNK9 
ICGC programENSG00000169427 
Somatic Mutations in Cancer : COSMICKCNK9 
CONAN: Copy Number AnalysisKCNK9 
Mutations and Diseases : HGMDKCNK9
OMIM605874    612292   
GENETestsKCNK9
Disease Genetic AssociationKCNK9
Huge Navigator KCNK9 [HugePedia]  KCNK9 [HugeCancerGEM]
Genomic VariantsKCNK9  KCNK9 [DGVbeta]
Exome VariantKCNK9
dbVarKCNK9
ClinVarKCNK9
snp3D : Map Gene to Disease51305
General knowledge
Homologs : HomoloGeneKCNK9
Homology/Alignments : Family Browser (UCSC)KCNK9
Phylogenetic Trees/Animal Genes : TreeFamKCNK9
Chemical/Protein Interactions : CTD51305
Chemical/Pharm GKB GenePA30065
Clinical trialKCNK9
Cancer Resource (Charite)ENSG00000169427
Other databases
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
CoreMineKCNK9
iHOPKCNK9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:01:43 CEST 2014

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