Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNK9 (potassium two pore domain channel subfamily K member 9)

Identity

Other namesK2p9.1
KT3.2
TASK-3
TASK3
HGNC (Hugo) KCNK9
LocusID (NCBI) 51305
Atlas_Id 43764
Location 8q24.3
Location_base_pair Starts at 140629365 and ends at 140715299 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NRDC (1p32.3) / KCNK9 (8q24.3)TRAPPC9 (8q24.3) / KCNK9 (8q24.3)USP2 (11q23.3) / KCNK9 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 0 ]
  Lung: Translocations in Squamous Cell Carcinoma

External links

Nomenclature
HGNC (Hugo)KCNK9   6283
Cards
Entrez_Gene (NCBI)KCNK9  51305  potassium two pore domain channel subfamily K member 9
AliasesK2p9.1; KT3.2; TASK-3; TASK3
GeneCards (Weizmann)KCNK9
Ensembl hg19 (Hinxton)ENSG00000169427 [Gene_View]  chr8:140629365-140715299 [Contig_View]  KCNK9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169427 [Gene_View]  chr8:140629365-140715299 [Contig_View]  KCNK9 [Vega]
ICGC DataPortalENSG00000169427
TCGA cBioPortalKCNK9
AceView (NCBI)KCNK9
Genatlas (Paris)KCNK9
WikiGenes51305
SOURCE (Princeton)KCNK9
Genomic and cartography
GoldenPath hg19 (UCSC)KCNK9  -     chr8:140629365-140715299 -  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNK9  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblKCNK9 - 8q24.3 [CytoView hg19]  KCNK9 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIKCNK9 [Mapview hg19]  KCNK9 [Mapview hg38]
OMIM605874   612292   
Gene and transcription
Genbank (Entrez)AF212829 AF248241 AF257080 AF279809 AK090707
RefSeq transcript (Entrez)NM_001282534
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_012842 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)KCNK9
Cluster EST : UnigeneHs.664608 [ NCBI ]
CGAP (NCI)Hs.664608
Alternative Splicing GalleryENSG00000169427
Gene ExpressionKCNK9 [ NCBI-GEO ]   KCNK9 [ EBI - ARRAY_EXPRESS ]   KCNK9 [ SEEK ]   KCNK9 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNK9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51305
GTEX Portal (Tissue expression)KCNK9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPC2 (Uniprot)
NextProtQ9NPC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPC2
Splice isoforms : SwissVarQ9NPC2 (Swissvar)
PhosPhoSitePlusQ9NPC2
Domains : Interpro (EBI)2pore_dom_K_chnl    2pore_dom_K_chnl_TASK    K_chnl_dom    KCNK9   
Domain families : Pfam (Sanger)Ion_trans_2 (PF07885)   
Domain families : Pfam (NCBI)pfam07885   
DMDM Disease mutations51305
Blocks (Seattle)KCNK9
PDB (SRS)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
PDB (PDBSum)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
PDB (IMB)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
PDB (RSDB)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
Structural Biology KnowledgeBase3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
SCOP (Structural Classification of Proteins)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
CATH (Classification of proteins structures)3P1N    3P1O    3P1P    3P1Q    3P1R    3P1S    3SMK    3SML    3SMM    3SMN    3SMO    3SPR    3UX0    4FR3   
SuperfamilyQ9NPC2
Human Protein AtlasENSG00000169427
Peptide AtlasQ9NPC2
HPRD16167
IPIIPI00014792   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPC2
IntAct (EBI)Q9NPC2
FunCoupENSG00000169427
BioGRIDKCNK9
STRING (EMBL)KCNK9
ZODIACKCNK9
Ontologies - Pathways
QuickGOQ9NPC2
Ontology : AmiGOvoltage-gated potassium channel activity  potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion transport  synaptic vesicle  potassium ion leak channel activity  stabilization of membrane potential  protein homodimerization activity  protein heterodimerization activity  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated potassium channel activity  potassium channel activity  plasma membrane  integral component of plasma membrane  potassium ion transport  synaptic vesicle  potassium ion leak channel activity  stabilization of membrane potential  protein homodimerization activity  protein heterodimerization activity  potassium ion transmembrane transport  
NDEx Network
Atlas of Cancer Signalling NetworkKCNK9
Wikipedia pathwaysKCNK9
Orthology - Evolution
OrthoDB51305
GeneTree (enSembl)ENSG00000169427
Phylogenetic Trees/Animal Genes : TreeFamKCNK9
Homologs : HomoloGeneKCNK9
Homology/Alignments : Family Browser (UCSC)KCNK9
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKCNK9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNK9
dbVarKCNK9
ClinVarKCNK9
1000_GenomesKCNK9 
Exome Variant ServerKCNK9
ExAC (Exome Aggregation Consortium)KCNK9 (select the gene name)
Genetic variants : HAPMAP51305
Genomic Variants (DGV)KCNK9 [DGVbeta]
Mutations
ICGC Data PortalKCNK9 
TCGA Data PortalKCNK9 
Broad Tumor PortalKCNK9
OASIS PortalKCNK9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKCNK9 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KCNK9
DgiDB (Drug Gene Interaction Database)KCNK9
DoCM (Curated mutations)KCNK9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNK9 (select a term)
intoGenKCNK9
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:140629365-140715299  ENSG00000169427
CONAN: Copy Number AnalysisKCNK9 
Mutations and Diseases : HGMDKCNK9
OMIM605874    612292   
MedgenKCNK9
Genetic Testing Registry KCNK9
NextProtQ9NPC2 [Medical]
TSGene51305
GENETestsKCNK9
Huge Navigator KCNK9 [HugePedia]
snp3D : Map Gene to Disease51305
BioCentury BCIQKCNK9
ClinGenKCNK9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51305
Chemical/Pharm GKB GenePA30065
Clinical trialKCNK9
Miscellaneous
canSAR (ICR)KCNK9 (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNK9
EVEXKCNK9
GoPubMedKCNK9
iHOPKCNK9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:07:38 CEST 2016

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