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KCNMA1 (potassium calcium-activated channel subfamily M alpha 1)

Identity

Alias (NCBI)BKTM
CADEDS
IEG16
KCa1.1
LIWAS
MaxiK
PNKD3
SAKCA
SLO
SLO-ALPHA
SLO1
bA205K10.1
hSlo
mSLO1
HGNC (Hugo) KCNMA1
HGNC Alias symbKCa1.1
mSLO1
HGNC Alias nameBK channel alpha subunit
 maxiK channel
 big potassium channel alpha subunit
HGNC Previous nameSLO
HGNC Previous namepotassium large conductance calcium-activated channel, subfamily M, alpha member 1
 potassium channel, calcium activated large conductance subfamily M alpha, member 1
LocusID (NCBI) 3778
Atlas_Id 47553
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 76884883 and ends at 77637808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCA1 (9q31.1) / KCNMA1 (10q22.3)ADK (10q22.2) / KCNMA1 (10q22.3)CPM (12q15) / KCNMA1 (10q22.3)
FAM149B1 (10q22.2) / KCNMA1 (10q22.3)FRMPD4 (Xp22.2) / KCNMA1 (10q22.3)KCNMA1 (10q22.3) / DCC (18q21.2)
KCNMA1 (10q22.3) / DLG5 (10q22.3)KCNMA1 (10q22.3) / ECD (10q22.1)KCNMA1 (10q22.3) / FAM134C (17q21.2)
KCNMA1 (10q22.3) / KCNMA1 (10q22.3)KCNMA1 (10q22.3) / LHFPL2 (5q14.1)KCNMA1 (10q22.3) / MSMB (10q11.23)
KCNMA1 (10q22.3) / SMARCA2 (9p24.3)KCNMA1 (10q22.3) / XAB2 (19p13.2)MTA3 (2p21) / KCNMA1 (10q22.3)
RUNX1 (21q22.12) / KCNMA1 (10q22.3)ADK 10q22.2 / KCNMA1 10q22.3CPM 12q15 / KCNMA1 10q22.3
FAM149B1 10q22.2 / KCNMA1 10q22.3KCNMA1 10q22.3 / DLG5 10q22.3KCNMA1 10q22.3 / ECD 10q22.1
KCNMA1 10q22.3 / MSMB 10q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;21)(q22;q22) RUNX1/KCNMA1

External links

Nomenclature
HGNC (Hugo)KCNMA1   6284
Cards
Entrez_Gene (NCBI)KCNMA1    potassium calcium-activated channel subfamily M alpha 1
AliasesBKTM; CADEDS; IEG16; KCa1.1; 
LIWAS; MaxiK; PNKD3; SAKCA; SLO; SLO-ALPHA; SLO1; bA205K10.1; hSlo; mSLO1
GeneCards (Weizmann)KCNMA1
Ensembl hg19 (Hinxton)ENSG00000156113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156113 [Gene_View]  ENSG00000156113 [Sequence]  chr10:76884883-77637808 [Contig_View]  KCNMA1 [Vega]
ICGC DataPortalENSG00000156113
TCGA cBioPortalKCNMA1
AceView (NCBI)KCNMA1
Genatlas (Paris)KCNMA1
SOURCE (Princeton)KCNMA1
Genetics Home Reference (NIH)KCNMA1
Genomic and cartography
GoldenPath hg38 (UCSC)KCNMA1  -     chr10:76884883-77637808 -  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KCNMA1  -     10q22.3   [Description]    (hg19-Feb_2009)
GoldenPathKCNMA1 - 10q22.3 [CytoView hg19]  KCNMA1 - 10q22.3 [CytoView hg38]
ImmunoBaseENSG00000156113
Genome Data Viewer NCBIKCNMA1 [Mapview hg19]  
OMIM600150   609446   617643   618596   618729   
Gene and transcription
Genbank (Entrez)AB113382 AB113575 AB209488 AB524033 AF025999
RefSeq transcript (Entrez)NM_001014797 NM_001161352 NM_001161353 NM_001271518 NM_001271519 NM_001271520 NM_001271521 NM_001271522 NM_001322829 NM_001322830 NM_001322832 NM_001322835 NM_001322836 NM_001322837 NM_001322838 NM_001322839 NM_002247
Consensus coding sequences : CCDS (NCBI)KCNMA1
Gene ExpressionKCNMA1 [ NCBI-GEO ]   KCNMA1 [ EBI - ARRAY_EXPRESS ]   KCNMA1 [ SEEK ]   KCNMA1 [ MEM ]
Gene Expression Viewer (FireBrowse)KCNMA1 [ Firebrowse - Broad ]
GenevisibleExpression of KCNMA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3778
GTEX Portal (Tissue expression)KCNMA1
Human Protein AtlasENSG00000156113-KCNMA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KCNMA1
Human Protein Atlas [tissue]ENSG00000156113-KCNMA1 [tissue]
HPRD15967
Protein Interaction databases
BioGRIDKCNMA1
STRING (EMBL)KCNMA1
ZODIACKCNMA1
Ontologies - Pathways
Litterature
PubMed212 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKCNMA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:14:44 CEST 2021
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